Browse Element(s) Details


OsAffx.1293.1.S1_x_at

Description gb:NM_188287.1
DB_XREF= gi:34903657
GEN=B1015E06.14
TID=OsAffx.1293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1015E06.14 (B1015E06.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g258601/11hypothetical protein
LOC_Os10g325201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25830OsAffx.26149.1.S1_at10/114+14981110..14983432hypothetical protein
LOC_Os04g25840OsAffx.13963.1.S1_at11/114+15000713..15002308F-box domain containing protein
LOC_Os04g25850OsAffx.23529.1.S1_at1/114+15006094..15007023transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25860OsAffx.26150.1.S1_at7/114+15007913..15009034hypothetical protein
LOC_Os04g25860OsAffx.1293.1.S1_x_at1/114+15007913..15009034hypothetical protein
LOC_Os04g25870OsAffx.26219.1.S1_at4/114+15011029..15011658SRF-type transcription factor family protein
LOC_Os04g25870OsAffx.26219.1.S1_x_at3/114+15011029..15011658SRF-type transcription factor family protein
LOC_Os04g25880NANA4+15017845..15019992hypothetical protein
LOC_Os04g25890NANA4+15028107..15035932retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1293.1.S1_x_at--788--896Chr07:6728764..6729126 (25 bp)
AGGCGCAGCCCATGGGCCAAAGTGC
NONE
OsAffx.1293.1.S1_x_at--1023--1653Chr11:5284614..5284653 (25 bp)
AGCCCATGGGCCAAAGTGCCGATCG
NONE
OsAffx.1293.1.S1_x_at--531--4553Chr11:5284613..5284652 (25 bp)
GCCCATGGGCCAAAGTGCCGATCGG
NONE
OsAffx.1293.1.S1_x_at--802--4332Chr11:5284611..5284650 (25 bp)
CCATGGGCCAAAGTGCCGATCGGGC
NONE
OsAffx.1293.1.S1_x_at--177--7910Chr12:20061857..20061973 (24 bp)
ATGGGCCAAAGTGCCGATCGGGCCA
NONE
OsAffx.1293.1.S1_x_at--712--4374Chr09:11364025..11364045 (21 bp)
CCAAAGTGCCGATCGGGCCATGCCG
NONE
OsAffx.1293.1.S1_x_at--762--8652Chr08:11286124..11286148 (25 bp)
TGGGCCGAGCCGTGCCGGGCAGGCC
NONE
OsAffx.1293.1.S1_x_at--393--82714Chr12:4921118..4921138 (21 bp)
GGCAGGCCTTTTGGCCATCTATAAA
NONE
OsAffx.1293.1.S1_x_at--539--8724Chr12:4921119..4921138 (20 bp)
AGGCCTTTTGGCCATCTATAAAGCA
NONE
OsAffx.1293.1.S1_x_at--120--84339Chr12:8166385..8166528 (25 bp)
GGCCTTTTGGCCATCTATAAAGCAA
NONE
OsAffx.1293.1.S1_x_at--719--4292Chr03:25195740..25195768 (24 bp)
CCTTTTGGCCATCTATAAAGCAAGC
NONE
Target Sequence 
AGGCGCAGCCCATGGGCCAAAGTGCCGATCGGGCCATGCCGGCCCGATGGCTGGTGGGCCGTGCCTGGGCCGAGCCGTGC
CGGGCAGGCCTTTTGGCCATCTATAAAGCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1293.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis