Browse Element(s) Details


OsAffx.26150.1.S1_at

Description tigr:9632.m02426
TID=OsAffx.26150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g258607/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25830OsAffx.26149.1.S1_at10/114+14981110..14983432hypothetical protein
LOC_Os04g25840OsAffx.13963.1.S1_at11/114+15000713..15002308F-box domain containing protein
LOC_Os04g25850OsAffx.23529.1.S1_at1/114+15006094..15007023transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25860OsAffx.26150.1.S1_at7/114+15007913..15009034hypothetical protein
LOC_Os04g25860OsAffx.1293.1.S1_x_at1/114+15007913..15009034hypothetical protein
LOC_Os04g25870OsAffx.26219.1.S1_at4/114+15011029..15011658SRF-type transcription factor family protein
LOC_Os04g25870OsAffx.26219.1.S1_x_at3/114+15011029..15011658SRF-type transcription factor family protein
LOC_Os04g25880NANA4+15017845..15019992hypothetical protein
LOC_Os04g25890NANA4+15028107..15035932retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26150.1.S1_at--762--10371Chr04:12684077..12684585 (25 bp)
TTTTGGCCATCTATATCGAATACAC
NONE
OsAffx.26150.1.S1_at--783--10871NONE
TTGGCCATCTATATCGAATACACCT
NONE
OsAffx.26150.1.S1_at--1051--8431NONE
GGCCATCTATATCGAATACACCTTT
NONE
OsAffx.26150.1.S1_at--103--4431NONE
GCCATCTATATCGAATACACCTTTT
NONE
OsAffx.26150.1.S1_at--720--10151Chr04:15008950..15008970 (21 bp)
TATCGAATACACCTTTTTATGCTGG
LOC_Os04g25860
OsAffx.26150.1.S1_at--16--531Chr04:15008950..15008971 (22 bp)
ATCGAATACACCTTTTTATGCTGGT
LOC_Os04g25860
OsAffx.26150.1.S1_at--1070--4711Chr04:15008966..15008990 (25 bp)
GCTGGTGGTATTGCAGTATATGTAC
LOC_Os04g25860
OsAffx.26150.1.S1_at--879--7731Chr04:15008969..15008993 (25 bp)
GGTGGTATTGCAGTATATGTACACA
LOC_Os04g25860
OsAffx.26150.1.S1_at--145--72Chr04:15008975..15008999 (25 bp)
ATTGCAGTATATGTACACAGTGGCG
LOC_Os04g25860
OsAffx.26150.1.S1_at--196--9051Chr04:15008977..15009001 (25 bp)
TGCAGTATATGTACACAGTGGCGGT
LOC_Os04g25860
OsAffx.26150.1.S1_at--898--1191Chr04:15008980..15009004 (25 bp)
AGTATATGTACACAGTGGCGGTGCC
LOC_Os04g25860
Target Sequence 
TTTTGGCCATCTATATCGAATACACCTTTTTATGCTGGTGGTATTGCAGTATATGTACACAGTGGCGGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis