Browse Element(s) Details


Os.10154.1.S1_at

Description gb:AK059107.1
DB_XREF= gi:32969125
TID=Os.10154.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA binding domain containing protein (OSJNBa0071K18.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D09, full insert sequence.
FL= gb:AK059107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g325409/11SAP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32500OsAffx.30641.1.S1_at11/1110+16689531..16692082expressed protein
LOC_Os10g32509NANA10+16696487..16696798hypothetical protein
LOC_Os10g32520Os.8753.4.S1_x_at9/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.1.S1_at8/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.4.S1_at4/1110+16698772..16705749expressed protein
LOC_Os10g32520OsAffx.1293.1.S1_x_at1/1110+16698772..16705749expressed protein
LOC_Os10g32540Os.10154.1.S1_at9/1110+16710651..16718168SAP domain containing protein, expressed
LOC_Os10g32550Os.10551.1.S1_at11/1110+16718650..16724037Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os10g32560Os.35344.3.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560Os.35344.18.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560OsAffx.22940.5.S1_x_at3/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32570OsAffx.30642.1.S1_at11/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32570Os.52782.1.S1_at1/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32580Os.5735.1.S1_at11/1110+16741534..16743085GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10154.1.S1_at--110--791Chr10:16717798..16717822 (25 bp)
ATGGAATCAAGGTACCCGACGAGAC
LOC_Os10g32540
Os.10154.1.S1_at--1090--1731Chr10:16717821..16717845 (25 bp)
ACCTTGGACAAGGTGCTCGCAGCTA
LOC_Os10g32540
Os.10154.1.S1_at--56--7791Chr10:16717832..16717856 (25 bp)
GGTGCTCGCAGCTAAACAATCTGGT
LOC_Os10g32540
Os.10154.1.S1_at--280--2751Chr10:16717908..16717932 (25 bp)
AAGAAGCCCCTTTGTAGCCATGATC
LOC_Os10g32540
Os.10154.1.S1_at--681--1471Chr10:16717946..16717970 (25 bp)
AGAATCATCAGCTCCATGCCATGGA
LOC_Os10g32540
Os.10154.1.S1_at--693--6431Chr10:16717969..16717993 (25 bp)
GATCATTTGTCTTGAGCTCGCCAGA
LOC_Os10g32540
Os.10154.1.S1_at--354--4411Chr10:16717988..16718012 (25 bp)
GCCAGATCAACCTTTGGCAGTGATG
LOC_Os10g32540
Os.10154.1.S1_at--200--6271Chr10:16718009..16718033 (25 bp)
GATGTGAGATCACTGCTCTGATGAT
LOC_Os10g32540
Os.10154.1.S1_at--925--1291Chr10:16718053..16718077 (25 bp)
AGATGATCTTATGCTTTGCCCTTGT
LOC_Os10g32540
Os.10154.1.S1_at--161--6631NONE
GTTGCGCCCGACAGAAATTAAACAA
NONE
Os.10154.1.S1_at--736--10231NONE
TATTGGGACAAGCTAGCCGCCACAA
NONE
Target Sequence 
ATGGAATCAAGGTACCCGACGAGACCTTGGACAAGGTGCTCGCAGCTAAACAATCTGGTGGAAACTCTGCGCTCCAACCG
CCACCTGCAGAGGAGTAATCTGATTGGAACAAGAAGCCCCTTTGTAGCCATGATCTAGCACACCACATAGAATCATCAGC
TCCATGCCATGGATCATTTGTCTTGAGCTCGCCAGATCAACCTTTGGCAGTGATGTGAGATCACTGCTCTGATGATAATC
TGTCAAGGTGGAGAAAGATGATCTTATGCTTTGCCCTTGTTGGCCTTCCACTCCACACTCGATGTATTTACAGACAACCA
ATTTTGATACTCCTAGATGAAATGGAATTGAAACTGCTTGGAAGTTGGAACACGANATGTGNTANCGTTNGCAGGATTTN
ATANGAACCAANTNNNNNNNCTANANNNNANNANNNNNGNNGNCNNNNNNAACACAACATCAACCACAAAACGTTGCGCC
CGACAGAAATTAAACAAGAGATTATTGGGACAAGCTAGCCGCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis