Browse Element(s) Details


OsAffx.30643.1.S1_at

Description tigr:9638.m02834
TID=OsAffx.30643.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative response regulator protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3260011/11myb-like DNA-binding domain, SHAQKYF class family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32550Os.10551.1.S1_at11/1110+16718650..16724037Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os10g32560Os.35344.3.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560Os.35344.18.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560OsAffx.22940.5.S1_x_at3/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32570OsAffx.30642.1.S1_at11/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32570Os.52782.1.S1_at1/1110+16733823..16737210tRNA synthetase class I family protein, putative, expressed
LOC_Os10g32580Os.5735.1.S1_at11/1110+16741534..16743085GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g32590Os.8163.1.S1_at11/1110+16744759..16745905universal stress protein family protein, expressed
LOC_Os10g32600OsAffx.30643.1.S1_at11/1110+16746707..16748588myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g32620NANA10+16758101..16758409hypothetical protein
LOC_Os10g32630OsAffx.25007.1.S1_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_s_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_at1/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32640NANA10+16765789..16769121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32649Os.27691.1.S1_x_at1/1110+16771508..16775994retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0045449biological_processregulation of transcription
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30643.1.S1_at--422--7131Chr10:16748389..16748413 (25 bp)
GTCATCCTCCATCAATATTAGCCAT
LOC_Os10g32600
OsAffx.30643.1.S1_at--1124--5371Chr10:16748324..16748348 (25 bp)
GAAGCTTCGCTAGCGCCTCTAGAAA
LOC_Os10g32600
OsAffx.30643.1.S1_at--537--6451Chr10:16748262..16748286 (25 bp)
GATCACGGACATACGAGACCTCGGA
LOC_Os10g32600
OsAffx.30643.1.S1_at--442--5091Chr10:16748208..16748232 (25 bp)
GCACCGTCAGTTCATTGCAGCAGTG
LOC_Os10g32600
OsAffx.30643.1.S1_at--1080--9031Chr10:16748193..16748217 (25 bp)
TGCAGCAGTGAACCACCTCGGAGAA
LOC_Os10g32600
OsAffx.30643.1.S1_at--586--5951Chr10:16747963..16747986 (24 bp)
GAGCAAGTTGCCAGTCATCTGCAGA
LOC_Os10g32600
OsAffx.30643.1.S1_at--113--2411Chr10:16746925..16746949 (25 bp)
AAACACGGAGCGACTTTGTCATCCA
LOC_Os10g32600
OsAffx.30643.1.S1_at--990--1371Chr10:16746881..16746905 (25 bp)
AGACCACCCTTCAAGATCGCAGTAT
LOC_Os10g32600
OsAffx.30643.1.S1_at--1--2271Chr10:16746834..16746858 (25 bp)
AAATCATGGACTACTCTTTACCGAG
LOC_Os10g32600
OsAffx.30643.1.S1_at--708--6031Chr10:16746810..16746834 (25 bp)
GAGATGACCTCTCAAGTGGCTCAGA
LOC_Os10g32600
OsAffx.30643.1.S1_at--815--5431Chr10:16746767..16746791 (25 bp)
GAACGATTACTCATCCGAAGGTTTC
LOC_Os10g32600
Target Sequence 
GTCATCCTCCATCAATATTAGCCATGGCTCGTGCTACTCCGGCTACCACGAGATCAACGGCCACCGAAGCTTCGCTAGCG
CCTCTAGAAAATGAGGTGAGAGATGACATGGTCAACTACAATGGCGAGATCACGGACATACGAGACCTCGGAAAGTCCAG
GCTGACCTGGACCACGCAGTTGCACCGTCAGTTCATTGCAGCAGTGAACCACCTCGGAGAAGACAAGGCAGTTCCAAAGA
AGATACTAGGGATAATGAAGGTCAAACATTTGACAAGAGAGCAAGTTGCCAGTCATCTGCAGAAATACAGGATGCAACTG
AAGAAATCGATTCCAACAACAAGCAAACACGGAGCGACTTTGTCATCCACCGCTCTCGACAAAACACAAGACCACCCTTC
AAGATCGCAGTATTTCAATCAAGACGGATGCAAGGAAATCATGGACTACTCTTTACCGAGAGATGACCTCTCAAGTGGCT
CAGAGTGCATGCTTGAAGAACTGAACGATTACTCATCCGAAGGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis