Browse Element(s) Details


Os.32630.1.S1_at

Description gb:AK103475.1
DB_XREF= gi:32988684
TID=Os.32630.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hypersensitive-induced response protein (OSJNBa0071K18.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130D18, full insert sequence.
FL= gb:AK103475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3270011/11hypersensitive-induced response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32630OsAffx.25007.1.S1_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_s_at11/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32630OsAffx.25007.2.S1_at1/1110+16762174..16765071retrotransposon protein, putative, unclassified
LOC_Os10g32640NANA10+16765789..16769121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32649Os.27691.1.S1_x_at1/1110+16771508..16775994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32658Os.27691.2.S1_x_at2/1110+16776246..16777172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32670NANA10+16778619..16779059hypothetical protein
LOC_Os10g32680Os.17506.1.S1_at10/1110+16782614..16786056Uncharacterized conserved protein, putative, expressed
LOC_Os10g32690Os.7588.1.S1_at10/1110+16786925..16791317expressed protein
LOC_Os10g32700Os.32630.1.S1_at11/1110+16787898..16790429hypersensitive-induced response protein, putative, expressed
LOC_Os10g32710Os.12790.1.S1_at11/1110+16791253..16795343WD-40 repeat protein, putative, expressed
LOC_Os10g32720OsAffx.8037.1.S1_s_at11/1110+16802532..16803314AWPM-19-like family protein, expressed
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32630.1.S1_at--481--6211Chr10:16788452..16788476 (25 bp)
GAGGCTGAAGCCAAGTATCTGTCTG
LOC_Os10g32700
Os.32630.1.S1_at--114--1411Chr10:16788381..16788405 (25 bp)
AGACAGTGTACTTGGCTTCTCTGGC
LOC_Os10g32700
Os.32630.1.S1_at--54--8231Chr10:16788359..16788383 (25 bp)
GGCAATGTTCCTGGGACTTCAGCTA
LOC_Os10g32700
Os.32630.1.S1_at--630--831Chr10:16788326..16788350 (25 bp)
ATGGATTTAGTCCTGCTGACGCAGT
LOC_Os10g32700
Os.32630.1.S1_at--520--9431Chr10:16788280..16788304 (25 bp)
TCGGTTCAACATCCAAATCTTCAGC
LOC_Os10g32700
Os.32630.1.S1_at--766--871Chr10:16788241..16788265 (25 bp)
ATGGCCCTGGTGCTGTTGCAGATAT
LOC_Os10g32700
Os.32630.1.S1_at--8--1271Chr10:16788222..16788246 (25 bp)
AGATATTGCCAGTCAGATCCGTGAT
LOC_Os10g32700
Os.32630.1.S1_at--211--6251Chr10:16788200..16788224 (25 bp)
GATGGATGTCTTCAGGCTCATCAAA
LOC_Os10g32700
Os.32630.1.S1_at--264--1091Chr10:16788135..16788159 (25 bp)
AGGGCCTTTCCACTGGTTTGTATGT
LOC_Os10g32700
Os.32630.1.S1_at--543--9631Chr10:16788041..16788065 (25 bp)
TCAGGTATTCTCTGGGATAGGTTCC
LOC_Os10g32700
Os.32630.1.S1_at--961--6631Chr10:16787915..16787939 (25 bp)
GTTGTCAGCCTGTATATCCTCAATA
LOC_Os10g32700
Target Sequence 
GAGGCTGAAGCCAAGTATCTGTCTGGGCTTGGTATTGCAAGGCAGCGGCAGGCTATAGTTGATGGGCTAAGAGACAGTGT
ACTTGGCTTCTCTGGCAATGTTCCTGGGACTTCAGCTAAGGATGTGATGGATTTAGTCCTGCTGACGCAGTACTTTGACA
CTATGAAAGAGATCGGTTCAACATCCAAATCTTCAGCAATTTTCCTCCCTCATGGCCCTGGTGCTGTTGCAGATATTGCC
AGTCAGATCCGTGATGGATGTCTTCAGGCTCATCAAACAAAGTGAAAAATCCAAGGAAGCAGTAACTTGGATTGGTGAGG
GCCTTTCCACTGGTTTGTATGTGCTTGAGGATATTGTGTGAGGTTGTAAAAATAGTATCAAGCTTGTAGAATAGTTTGTG
CTTAATGTAGATCAGGTATTCTCTGGGATAGGTTCCAATCCATACGGAATGAAGAATGTGTGCTTTACATGAATCTAGTT
GATGGTTGTGGTGTGCTTACATACAGTATGCTGCATGTGTGCTGTGAGAAAAATAATGTTGTCAGCCTGTATATCCTCAA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis