Browse Element(s) Details


Os.12790.1.S1_at

Description gb:AK068906.1
DB_XREF= gi:32978931
TID=Os.12790.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative WD domain containing protein (OSJNBa0071K18.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002M22, full insert sequence.
FL= gb:AK068906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3271011/11WD-40 repeat protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32640NANA10+16765789..16769121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32649Os.27691.1.S1_x_at1/1110+16771508..16775994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32658Os.27691.2.S1_x_at2/1110+16776246..16777172retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32670NANA10+16778619..16779059hypothetical protein
LOC_Os10g32680Os.17506.1.S1_at10/1110+16782614..16786056Uncharacterized conserved protein, putative, expressed
LOC_Os10g32690Os.7588.1.S1_at10/1110+16786925..16791317expressed protein
LOC_Os10g32700Os.32630.1.S1_at11/1110+16787898..16790429hypersensitive-induced response protein, putative, expressed
LOC_Os10g32710Os.12790.1.S1_at11/1110+16791253..16795343WD-40 repeat protein, putative, expressed
LOC_Os10g32720OsAffx.8037.1.S1_s_at11/1110+16802532..16803314AWPM-19-like family protein, expressed
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12790.1.S1_at--156--6371Chr10:16791992..16792016 (25 bp)
GATCCAAAGTTCATTGCACCAGCAT
LOC_Os10g32710
Os.12790.1.S1_at--96--1551Chr10:16791972..16791996 (25 bp)
AGCATATTCCCAAACTCAGCCGAAA
LOC_Os10g32710
Os.12790.1.S1_at--150--9671Chr10:16791957..16791981 (25 bp)
TCAGCCGAAACCTGTATTTGCAGAG
LOC_Os10g32710
Os.12790.1.S1_at--678--1211Chr10:16791807..16791831 (25 bp)
AGTTACATGCATGATGAGCCTGGTA
LOC_Os10g32710
Os.12790.1.S1_at--881--1511Chr10:16791791..16791815 (25 bp)
AGCCTGGTAACACAATTTGTTGACA
LOC_Os10g32710
Os.12790.1.S1_at--533--1351Chr10:16791590..16791614 (25 bp)
AGAGTTGTGGCCCATGTAGCAGTCC
LOC_Os10g32710
Os.12790.1.S1_at--681--4331Chr10:16791579..16791603 (25 bp)
CCATGTAGCAGTCCGGCACGATGTG
LOC_Os10g32710
Os.12790.1.S1_at--627--10171Chr10:16791545..16791569 (25 bp)
TATACCATTACCACCAACACGTTCT
LOC_Os10g32710
Os.12790.1.S1_at--342--8711Chr10:16791342..16791366 (25 bp)
TGTCCATGGTGAAGCTGTAGCCTGT
LOC_Os10g32710
Os.12790.1.S1_at--177--5411Chr10:16791332..16791356 (25 bp)
GAAGCTGTAGCCTGTTTGCAGACAT
LOC_Os10g32710
Os.12790.1.S1_at--547--4931Chr10:16791303..16791327 (25 bp)
GCATTTACCGTAGGGCAAAGTTGTC
LOC_Os10g32710
Target Sequence 
GATCCAAAGTTCATTGCACCAGCATATTCCCAAACTCAGCCGAAACCTGTATTTGCAGAGTCGGATTCTGAAGGCGAAGA
GAAAAAATAATTGNNACAATATTAAGTTACATGCATGATGAGCCTGGTAACACAATTTGTTGACAAAGATAACATTGGAG
ACAATCTGTTTAGAAAACTATTGTGAAAGAGTTGTGGCCCATGTAGCAGTCCGGCACGATGTGGCTTTGATGTATACCAT
TACCACCAACACGTTCTCCATCCATCAGGCTTCCAGTCCTGTTTGTGCGCAGCAGCTCACAATAATACGACCGGTGTACA
ATTATGTCGTTGGCTGGCAACTGATGTGGACATTATTTGTACCTACTGACAGTAGTAACTCCAGCTTATTTTGTATCTTG
ATCAGTATACAATCTCGCGTTCTTCCATCATNTATTGTCCATGGTGAAGCTGTAGCCTGTTTGCAGACATAAATGCATTT
ACCGTAGGGCAAAGTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis