Browse Element(s) Details


OsAffx.8037.1.S1_s_at

Description tigr:9638.m02848
TID=OsAffx.8037.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3272011/11AWPM-19-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32670NANA10+16778619..16779059hypothetical protein
LOC_Os10g32680Os.17506.1.S1_at10/1110+16782614..16786056Uncharacterized conserved protein, putative, expressed
LOC_Os10g32690Os.7588.1.S1_at10/1110+16786925..16791317expressed protein
LOC_Os10g32700Os.32630.1.S1_at11/1110+16787898..16790429hypersensitive-induced response protein, putative, expressed
LOC_Os10g32710Os.12790.1.S1_at11/1110+16791253..16795343WD-40 repeat protein, putative, expressed
LOC_Os10g32720OsAffx.8037.1.S1_s_at11/1110+16802532..16803314AWPM-19-like family protein, expressed
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8037.1.S1_s_at--102--4671Chr10:16802649..16802673 (25 bp)
GCGTGTTTGTGTTATGTCACCGGGA
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--361--6871Chr10:16802645..16802669 (25 bp)
GTTTGTGTTATGTCACCGGGAAATG
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--1143--751Chr10:16802636..16802660 (25 bp)
ATGTCACCGGGAAATGTGTTTTGCT
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--238--1771Chr10:16802631..16802655 (25 bp)
ACCGGGAAATGTGTTTTGCTGATGT
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--40--7631Chr10:16802628..16802652 (25 bp)
GGGAAATGTGTTTTGCTGATGTGTA
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--278--6811Chr10:16802619..16802643 (25 bp)
GTTTTGCTGATGTGTACGCGTTGGG
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--1075--7891Chr10:16802595..16802619 (25 bp)
GGTTCTCGCGACGTCGATTGTAGTA
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--987--9331Chr10:16802590..16802614 (25 bp)
TCGCGACGTCGATTGTAGTATTGCA
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--197--5771Chr10:16802586..16802610 (25 bp)
GACGTCGATTGTAGTATTGCAAATT
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--133--31Chr10:16802571..16802595 (25 bp)
ATTGCAAATTTGCTGCTTTTTAATA
LOC_Os10g32720
OsAffx.8037.1.S1_s_at--1019--2231Chr10:16802566..16802590 (25 bp)
AAATTTGCTGCTTTTTAATAATGGA
LOC_Os10g32720
Target Sequence 
GCGTGTTTGTGTTATGTCACCGGGAAATGTGTTTTGCTGATGTGTACGCGTTGGGGTTCTCGCGACGTCGATTGTAGTAT
TGCAAATTTGCTGCTTTTTAATAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8037.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis