Browse Element(s) Details


OsAffx.28308.2.S1_x_at

Description tigr:9638.m02852
TID=OsAffx.28308.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3276011/11von Willebrand factor type A domain containing protein, expressed
LOC_Os01g681042/11Zinc finger, C2H2 type family protein, expressed
LOC_Os07g065301/11hypothetical protein
LOC_Os03g300401/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32720OsAffx.8037.1.S1_s_at11/1110+16802532..16803314AWPM-19-like family protein, expressed
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0004407molecular_functionhistone deacetylase activity
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28308.2.S1_x_at--184--4074Chr07:3169697..3170113 (25 bp)
CGAGACATGGAGACCGGACGGACCA
LOC_Os07g06530
OsAffx.28308.2.S1_x_at--719--3494Chr08:5144808..5144835 (25 bp)
CATGGAGACCGGACGGACCACGAGC
NONE
OsAffx.28308.2.S1_x_at--430--1553Chr03:24817602..24817976 (25 bp)
AGCTTGTCCGGGTGGAAGCCATCGA
NONE
OsAffx.28308.2.S1_x_at--694--1691Chr10:16826556..16826580 (25 bp)
AGCCATCGACGACATCGCGCTGGCG
LOC_Os10g32760
OsAffx.28308.2.S1_x_at--151--4691Chr10:16826381..16826405 (25 bp)
GCGGACCGGCGGCAGTACGAGCTGT
LOC_Os10g32760
OsAffx.28308.2.S1_x_at--563--3411Chr10:16826315..16826339 (25 bp)
CAGCAGCGCGCCACGTCGAGGCAGA
LOC_Os10g32760
OsAffx.28308.2.S1_x_at--980--4351Chr10:16826305..16826329 (25 bp)
CCACGTCGAGGCAGATGTCCGGCGA
LOC_Os10g32760
OsAffx.28308.2.S1_x_at--961--7651Chr10:16826222..16826246 (25 bp)
GGGATCACCGTGTCGTACGTGACGC
LOC_Os10g32760
OsAffx.28308.2.S1_x_at--486--6351Chr10:16826193..16826217 (25 bp)
GATGCTGGACATGCTCGACCGGTCG
LOC_Os10g32760
OsAffx.28308.2.S1_x_at--527--8531Chr10:16826188..16826212 (25 bp)
TGGACATGCTCGACCGGTCGCGCAG
LOC_Os10g32760
OsAffx.28308.2.S1_x_at--250--611Chr10:16826183..16826207 (25 bp)
ATGCTCGACCGGTCGCGCAGGTCGC
LOC_Os10g32760
Target Sequence 
CGAGACATGGAGACCGGACGGACCACGAGCGTGGCCGGCGACGAGGAGGCGGTGGTGCTCAGGCCGTCGCGGGCGGAGTC
CGGCGTCGCCGAGCGCTCCGTGGAGGTGGACCGGGAGCTTGTCCGGGTGGAAGCCATCGACGACATCGCGCTGGCGCGGG
CGGCGGCGGAGCGCGGCGAGTACGCGGAGGCGGCGGAGATCCTCCGGAGCAGGCAGCGCGCGGTGGCGCGGTCCGCCGCG
GCGCGCGCCGGGGACGCCATGTGCGCGGCGCTGTCCGGGGAGCTGCGGGAGATGCGCGCCCGCGTGGCGGACCGGCGGCA
GTACGAGCTGTCCGGGCGCGCGTACGTGCTCGCCGGGCTGAGCTCGCACGCGCAGCAGCGCGCCACGTCGAGGCAGATGT
CCGGCGAGGTGGCGCCGCGCCGCCACGCTCACGGCGGAGGCGGGGGATCGTCGGAGCTCCCGACGGGGATCACCGTGTCG
TACGTGACGCCGGCGATGCTGGACATGCTCGACCGGTCGCGCAGGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28308.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis