Browse Element(s) Details


Os.8788.1.S1_at

Description gb:AY332469.1
DB_XREF= gi:33242902
GEN=GLN
TID=Os.8788.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8788 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) GS1-like protein (GLN) mRNA, complete cds.
PROD=GS1-like protein
FL= gb:AK062574.1 gb:AY332469.1 gb:AK066663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3273011/11HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g148146/11Riboflavin kinase/FAD synthetase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32670NANA10+16778619..16779059hypothetical protein
LOC_Os10g32680Os.17506.1.S1_at10/1110+16782614..16786056Uncharacterized conserved protein, putative, expressed
LOC_Os10g32690Os.7588.1.S1_at10/1110+16786925..16791317expressed protein
LOC_Os10g32700Os.32630.1.S1_at11/1110+16787898..16790429hypersensitive-induced response protein, putative, expressed
LOC_Os10g32710Os.12790.1.S1_at11/1110+16791253..16795343WD-40 repeat protein, putative, expressed
LOC_Os10g32720OsAffx.8037.1.S1_s_at11/1110+16802532..16803314AWPM-19-like family protein, expressed
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009231biological_processriboflavin biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8788.1.S1_at--721--3692Chr10:16804850..16805086 (25 bp)
CTAGGAATTCCAACAGCCAACTTAC
LOC_Os10g32730
Os.8788.1.S1_at--85--4291Chr10:16804835..16804859 (25 bp)
GCCAACTTACCTGCAGAAAACTTCT
LOC_Os10g32730
Os.8788.1.S1_at--1056--10172Chr10:16804780..16804804 (25 bp)
TATACTTTGGCTGGGCTGGACTTTC
LOC_Os10g32730
Os.8788.1.S1_at--534--5891Chr10:16804728..16804752 (25 bp)
GAGCATTGGCTGGAACCCTTATTTT
LOC_Os10g32730
Os.8788.1.S1_at--575--5432Chr10:16804604..16804628 (25 bp)
GAACCATGGTTGCTTCACGATTTTG
LOC_Os10g32730
Os.8788.1.S1_at--175--8092Chr10:16804560..16804584 (25 bp)
GGAGCTGCGCCTTGTTATTGTTGGT
LOC_Os10g32730
Os.8788.1.S1_at--729--6612Chr10:16804544..16804565 (22 bp)
GTTGGTTACATACGACCCGAGGCCA
LOC_Os10g32730
Os.8788.1.S1_at--553--2952Chr10:16804363..16804387 (25 bp)
AAGGCCCTGAATTTACCATTATACG
LOC_Os10g32730
Os.8788.1.S1_at--713--3491Chr10:16804327..16804351 (25 bp)
GACTCGCCGTACCTAAGAAATTCCT
LOC_Os10g32730
Os.8788.1.S1_at--1106--5371Chr10:16804224..16804248 (25 bp)
GAAGAATTCTCTTTCGCAGCGTTGT
LOC_Os10g32730
Os.8788.1.S1_at--951--10551Chr10:16804177..16804201 (25 bp)
TTCTTGTGCTTGTACTGCTGCATTA
LOC_Os10g32730
Target Sequence 
CTAGGAATTCCAACAGCCAACTTACCTGCAGAAAACTTCTCCGANGTACTATCAGAGCATACATCAGGGGTATACTTTGG
CTGGGCTGGACTTTCAACNCGAGGTATATTTAAGATGGTCATGAGCATTGGCTGGAACCCTTATTTTGATAACACGGAGA
AGACTATTGAACCATGGTTGCTTCACGATTTTGGTGAAGACTTTTACGGAGAGGAGCTGCGCCTTGTTATTGTTGGTTAC
ATACGACCCGAGGCCAACTTTCCTTCNCTTGAGAGCTTGATAGAGAGGATTCACGAGGATGCAAGGATATCAGATAAGGC
CCTGAATTTACCATTATACGCCAAGTATAAAGACTCGCCGTACCTAAGAAATTCCTTGAAGGAGGACAATTCTGCTAACG
GGAACCAGTCAGTGATAGATTCCAAGTGATGATTCAACGTTGTGAAGTGAAAGACATGAAGAATTCTCTTTCGCAGCGTT
GTTGATGCAGAAAGAGCACTACTGTTCTTGTGCTTGTACTGCTGCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis