Browse Element(s) Details


OsAffx.18492.1.S1_at

Description tigr:9638.m02851
TID=OsAffx.18492.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3275011/11von Willebrand factor type A domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32720OsAffx.8037.1.S1_s_at11/1110+16802532..16803314AWPM-19-like family protein, expressed
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18492.1.S1_at--65--5111Chr10:16824128..16824152 (25 bp)
GCACGTACCGCGACACGGTGACCGG
LOC_Os10g32750
OsAffx.18492.1.S1_at--206--3971Chr10:16824113..16824137 (25 bp)
CGGTGACCGGGCGAACCATCGACGT
LOC_Os10g32750
OsAffx.18492.1.S1_at--1032--6191Chr10:16823991..16824015 (25 bp)
GAGGCAACCGAGGACATCGCGATCG
LOC_Os10g32750
OsAffx.18492.1.S1_at--355--3951Chr10:16823846..16823870 (25 bp)
CGGACGACCTGTGCGAGCTCGAGGA
LOC_Os10g32750
OsAffx.18492.1.S1_at--513--7631Chr10:16823733..16823757 (25 bp)
GGGACGACGTACAACTCCTCCAGAA
LOC_Os10g32750
OsAffx.18492.1.S1_at--556--7031Chr10:16823725..16823749 (25 bp)
GTACAACTCCTCCAGAAGGAAGCAA
LOC_Os10g32750
OsAffx.18492.1.S1_at--249--1471Chr10:16823712..16823736 (25 bp)
AGAAGGAAGCAATGCGCACGCAAGG
LOC_Os10g32750
OsAffx.18492.1.S1_at--284--4111Chr10:16823681..16823705 (25 bp)
CGAAGGAGAGGTTATACGCGACGCC
LOC_Os10g32750
OsAffx.18492.1.S1_at--689--6151Chr10:16823674..16823698 (25 bp)
GAGGTTATACGCGACGCCGGCAATG
LOC_Os10g32750
OsAffx.18492.1.S1_at--1041--6291Chr10:16823647..16823671 (25 bp)
GATGATGGTCTCCAAGTCGCGCGAC
LOC_Os10g32750
OsAffx.18492.1.S1_at--690--6251Chr10:16823644..16823668 (25 bp)
GATGGTCTCCAAGTCGCGCGACGAG
LOC_Os10g32750
Target Sequence 
GCACGTACCGCGACACGGTGACCGGGCGAACCATCGACGTCGCCGCCGGCGAGGACGCCGTCGTGAGGCGGCCCCTGGAA
GTGTCCGCGGCGGACCAGGAGGTGTCCATGGAGGTGGAACGGGAGCGCGTGCGCGTGGAGGCAACCGAGGACATCGCGAT
CGCGCGGGCGGCGGCCGAGCGCGGCGACCACGCCGAGGCGGCGCGGACGCTCCAGCTTCGCCGGGAGGCGGTGGAGGCGT
CGGCGCCGGGGTTCGCCGGCGACGTGATGTGCGACGAGCTGGCGGACGACCTGTGCGAGCTCGAGGAGGAGGTGGAGGAC
GCGCCGCGGTACGAGCGCGCCGGCCGCGCGCGCATGCTCGCCGGCATGAGCTCGCACGGACTGCAGCGCGCGTCGGGGAC
GACGTACAACTCCTCCAGAAGGAAGCAATGCGCACGCAAGGAGAGGGCGAAGGAGAGGTTATACGCGACGCCGGCAATGG
GGATGATGGTCTCCAAGTCGCGCGACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis