Browse Element(s) Details


Os.46668.1.S1_at

Description gb:NM_196909.1
DB_XREF= gi:37535177
TID=Os.46668.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46668 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0071K18.2), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3274011/11von Willebrand factor type A domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32690Os.7588.1.S1_at10/1110+16786925..16791317expressed protein
LOC_Os10g32700Os.32630.1.S1_at11/1110+16787898..16790429hypersensitive-induced response protein, putative, expressed
LOC_Os10g32710Os.12790.1.S1_at11/1110+16791253..16795343WD-40 repeat protein, putative, expressed
LOC_Os10g32720OsAffx.8037.1.S1_s_at11/1110+16802532..16803314AWPM-19-like family protein, expressed
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46668.1.S1_at--985--7751Chr10:16812082..16812106 (25 bp)
GGTGACCGTCCCTCGCACGGTGGAC
LOC_Os10g32740
Os.46668.1.S1_at--581--4251Chr10:16812053..16812077 (25 bp)
CCGTGGGCTACGACGGCATGTCGCC
LOC_Os10g32740
Os.46668.1.S1_at--195--9371Chr10:16812023..16812047 (25 bp)
TCGAGCGGGAGCTGCATCGCGTCCA
LOC_Os10g32740
Os.46668.1.S1_at--44--9071Chr10:16812011..16812035 (25 bp)
TGCATCGCGTCCAGGCCACGGAGGA
LOC_Os10g32740
Os.46668.1.S1_at--239--3491Chr10:16811844..16811868 (25 bp)
CAGGACAGGGTGGAGACGCGGCAGC
LOC_Os10g32740
Os.46668.1.S1_at--371--5711Chr10:16811742..16811766 (25 bp)
GACTCGACGGAGCTCACCAGCGTCA
LOC_Os10g32740
Os.46668.1.S1_at--672--1931Chr10:16811736..16811760 (25 bp)
ACGGAGCTCACCAGCGTCATCCATA
LOC_Os10g32740
Os.46668.1.S1_at--116--9991Chr10:16811709..16811733 (25 bp)
TACCAGACGCCCTTCATGGTCGACA
LOC_Os10g32740
Os.46668.1.S1_at--518--5671Chr10:16811688..16811712 (25 bp)
GACATGCTGCAGCGCTCGCAGACGC
LOC_Os10g32740
Os.46668.1.S1_at--1147--4791Chr10:16811675..16811699 (25 bp)
GCTCGCAGACGCTCCAGCCGGAGGT
LOC_Os10g32740
Os.46668.1.S1_at--40--7211Chr10:16811652..16811676 (25 bp)
GTCGTCGTGGCGATGAGCCGCTCGG
LOC_Os10g32740
Target Sequence 
GGTGACCGTCCCTCGCACGGTGGACGCCCCCGTGGGCTACGACGGCATGTCGCCGGAGGTCGAGCGGGAGCTGCATCGCG
TCCAGGCCACGGAGGACATGGCCGCCGCGCGCGCCGCCGCGGAGCGGGGCGACTTCGAGCTGGCCGCCGCCATCCTCGAC
GAGCGCCGCGGCGTGCTCGAGTCGCGGGCGGACGACGACCCGCAGTCCGTGGCGCTGGCGGCGGAGCTGAGGGAGATGCA
GGACAGGGTGGAGACGCGGCAGCGGTACGAGGAGTCCGGCCGCGCCTACATGCTCGCCGGCCTGAGCTCCCACTCGTGGC
AGCGCGCCACGGCGCGCGGCGACTCGACGGAGCTCACCAGCGTCATCCATACCTACCAGACGCCCTTCATGGTCGACATG
CTGCAGCGCTCGCAGACGCTCCAGCCGGAGGTCGTCGTGGCGATGAGCCGCTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis