Browse Element(s) Details


OsAffx.17232.1.S1_at

Description tigr:9636.m02974
TID=OsAffx.17232.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2990011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29854Os.52386.2.S1_x_at10/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29854OsAffx.278.1.S1_at1/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29854OsAffx.17191.1.S1_at1/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29870OsAffx.29426.1.S1_at11/118+18228606..18229067hypothetical protein
LOC_Os08g29880OsAffx.25007.2.S1_s_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29880OsAffx.25007.1.S1_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29880OsAffx.25007.2.S1_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29890OsAffx.5982.1.S1_at9/118+18237443..18238316hypothetical protein
LOC_Os08g29900OsAffx.17232.1.S1_at11/118+18238866..18239363hypothetical protein
LOC_Os08g29910NANA8+18244101..18246661prenyltransferase, UbiA family protein
LOC_Os08g29920NANA8+18249209..18252123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29930Os.10703.2.S1_x_at1/118+18252439..18258549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29940OsAffx.5983.1.S1_at11/118+18261707..18262076hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17232.1.S1_at--232--4491Chr08:18238906..18238930 (25 bp)
GCCGTGTCCCGCATGCTAGTCTGAT
LOC_Os08g29900
OsAffx.17232.1.S1_at--666--8711Chr08:18238910..18238934 (25 bp)
TGTCCCGCATGCTAGTCTGATCCTC
LOC_Os08g29900
OsAffx.17232.1.S1_at--432--3371Chr08:18238963..18238987 (25 bp)
CACCAAGCATGGAGTCCTTCCCCGA
LOC_Os08g29900
OsAffx.17232.1.S1_at--875--7231Chr08:18239010..18239034 (25 bp)
GTCGCCCGAAACGACATCTTCGCCG
LOC_Os08g29900
OsAffx.17232.1.S1_at--762--8451Chr08:18239067..18239091 (25 bp)
TGGCCGCGTCCGCTAATTCCAATCT
LOC_Os08g29900
OsAffx.17232.1.S1_at--775--9251Chr08:18239091..18239115 (25 bp)
TCCTCTTCTTCCTATGATGGCAGTG
LOC_Os08g29900
OsAffx.17232.1.S1_at--88--3771Chr08:18239093..18239117 (25 bp)
CTCTTCTTCCTATGATGGCAGTGGG
LOC_Os08g29900
OsAffx.17232.1.S1_at--708--8291Chr08:18239122..18239146 (25 bp)
GGCTTCCCGCAACCGTGTCGTTGTA
LOC_Os08g29900
OsAffx.17232.1.S1_at--1110--5151Chr08:18239130..18239154 (25 bp)
GCAACCGTGTCGTTGTACTCGCACC
LOC_Os08g29900
OsAffx.17232.1.S1_at--49--8711Chr08:18239137..18239161 (25 bp)
TGTCGTTGTACTCGCACCTCTCCAG
LOC_Os08g29900
OsAffx.17232.1.S1_at--1037--8471Chr08:18239260..18239284 (25 bp)
TGGCGGCACGGCCATATGCCATGCT
LOC_Os08g29900
Target Sequence 
GCCGTGTCCCGCATGCTAGTCTGATCCTCCACCCCGCCCTCTTGCCGCCGCCGCCGCCACCAAGCATGGAGTCCTTCCCC
GACGGTCCCAGTACTCCTGGCCCCGTCGCCCGAAACGACATCTTCGCCGCCACACTATGCCACCGCCACCGTCATCGCCG
GTGGCCGCGTCCGCTAATTCCAATCTCCTCTTCTTCCTATGATGGCAGTGGGGCCCGGCTTCCCGCAACCGTGTCGTTGT
ACTCGCACCTCTCCAGCACCAGCTCGGGCGCCGGTGGGGATTCCACGCCTCCTCCGCAACAGTCGCCGCAGGCGAAGCCA
CCTCCTCCGTCGTGGGTGGACAGGTGGGTCCCACTGGCGGCACGGCCATATGCCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis