Browse Element(s) Details


OsAffx.29426.1.S1_at

Description tigr:9636.m02971
TID=OsAffx.29426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2987011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29840Os.46012.2.S1_x_at5/118+18205118..18209361retrotransposon protein, putative, unclassified
LOC_Os08g29840Os.46012.3.S1_x_at4/118+18205118..18209361retrotransposon protein, putative, unclassified
LOC_Os08g29840Os.27088.1.A1_x_at2/118+18205118..18209361retrotransposon protein, putative, unclassified
LOC_Os08g29854Os.52386.2.S1_x_at10/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29854OsAffx.278.1.S1_at1/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29854OsAffx.17191.1.S1_at1/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29870OsAffx.29426.1.S1_at11/118+18228606..18229067hypothetical protein
LOC_Os08g29880OsAffx.25007.2.S1_s_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29880OsAffx.25007.1.S1_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29880OsAffx.25007.2.S1_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29890OsAffx.5982.1.S1_at9/118+18237443..18238316hypothetical protein
LOC_Os08g29900OsAffx.17232.1.S1_at11/118+18238866..18239363hypothetical protein
LOC_Os08g29910NANA8+18244101..18246661prenyltransferase, UbiA family protein
LOC_Os08g29920NANA8+18249209..18252123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29930Os.10703.2.S1_x_at1/118+18252439..18258549retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29426.1.S1_at--37--4291Chr08:18228906..18228930 (25 bp)
CCTCCTTGACGGTTGTGTGGCTTCT
LOC_Os08g29870
OsAffx.29426.1.S1_at--916--9211Chr08:18228873..18228897 (25 bp)
TCCACTGGTGCATGTAGAGGCTGAT
LOC_Os08g29870
OsAffx.29426.1.S1_at--491--9251Chr08:18228754..18228778 (25 bp)
TCCTTTCTGTTGCATCTCATCGTTG
LOC_Os08g29870
OsAffx.29426.1.S1_at--567--6671Chr08:18228746..18228770 (25 bp)
GTTGCATCTCATCGTTGCGTTATGA
LOC_Os08g29870
OsAffx.29426.1.S1_at--383--9111Chr08:18228731..18228755 (25 bp)
TGCGTTATGAGTGTTGCGGCTACCA
LOC_Os08g29870
OsAffx.29426.1.S1_at--513--8851Chr08:18228724..18228748 (25 bp)
TGAGTGTTGCGGCTACCAAAGATGA
LOC_Os08g29870
OsAffx.29426.1.S1_at--423--6311Chr08:18228704..18228728 (25 bp)
GATGAGCACATGTGCTGGTCCTCAG
LOC_Os08g29870
OsAffx.29426.1.S1_at--763--3891Chr08:18228690..18228714 (25 bp)
CTGGTCCTCAGTGGCCAGGTTTGGC
LOC_Os08g29870
OsAffx.29426.1.S1_at--652--971Chr08:18228674..18228698 (25 bp)
AGGTTTGGCAACACCCCTGCCATCG
LOC_Os08g29870
OsAffx.29426.1.S1_at--489--5473Chr12:13756682..13756701 (20 bp)
GAACTCGCCCAACAAATGCGACGAT
NONE
OsAffx.29426.1.S1_at--589--2191Chr08:18228637..18228661 (25 bp)
ACAAATGCGACGATAGCTCTTTCTA
LOC_Os08g29870
Target Sequence 
CCTCCTTGACGGTTGTGTGGCTTCTCCTCGACCTCCACTGGTGCATGTAGAGGCTGATAGTGGCGGGGCAGTGGAGCTCG
AGCGGCAGGGGAGGCTCCTCCTCAGCTATCTCGGCAACCACATGTGCACTCTAGCGGAGGCCATCATGTCCATCCTTTCT
GTTGCATCTCATCGTTGCGTTATGAGTGTTGCGGCTACCAAAGATGAGCACATGTGCTGGTCCTCAGTGGCCAGGTTTGG
CAACACCCCTGCCATCGAGAACTCGCCCAACAAATGCGACGATAGCTCTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis