Browse Element(s) Details


Os.52386.2.S1_x_at

Description gb:AK066779.1
DB_XREF= gi:32976797
TID=Os.52386.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013077A22, full insert sequence.
FL= gb:AK066779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2985410/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29809Os.23364.1.S1_a_at11/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.23364.2.S1_a_at10/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.8905.1.S1_at3/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29830NANA8+18201514..18203261transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g29840Os.46012.2.S1_x_at5/118+18205118..18209361retrotransposon protein, putative, unclassified
LOC_Os08g29840Os.46012.3.S1_x_at4/118+18205118..18209361retrotransposon protein, putative, unclassified
LOC_Os08g29840Os.27088.1.A1_x_at2/118+18205118..18209361retrotransposon protein, putative, unclassified
LOC_Os08g29854Os.52386.2.S1_x_at10/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29854OsAffx.278.1.S1_at1/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29854OsAffx.17191.1.S1_at1/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29870OsAffx.29426.1.S1_at11/118+18228606..18229067hypothetical protein
LOC_Os08g29880OsAffx.25007.2.S1_s_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29880OsAffx.25007.1.S1_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29880OsAffx.25007.2.S1_at5/118+18234055..18236895retrotransposon protein, putative, unclassified
LOC_Os08g29890OsAffx.5982.1.S1_at9/118+18237443..18238316hypothetical protein
LOC_Os08g29900OsAffx.17232.1.S1_at11/118+18238866..18239363hypothetical protein
LOC_Os08g29910NANA8+18244101..18246661prenyltransferase, UbiA family protein
LOC_Os08g29920NANA8+18249209..18252123retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52386.2.S1_x_at--664--8211Chr08:18224267..18224291 (25 bp)
GGAATTTCCAAGCAGATCCGTGAAT
LOC_Os08g29854
Os.52386.2.S1_x_at--394--3031Chr08:18224301..18224324 (24 bp)
AATCCAGTCAGAGTTGCCTTCAGGG
LOC_Os08g29854
Os.52386.2.S1_x_at--757--5591Chr08:18224467..18224491 (25 bp)
GAAATAGAATCACTGCACCATCCGC
LOC_Os08g29854
Os.52386.2.S1_x_at--893--3551NONE
CATCAACTTAGGGTTCATTCTTATG
NONE
Os.52386.2.S1_x_at--1115--6111Chr08:18225789..18225813 (25 bp)
GAGTGTTCTGAGTCTGAATTCTGAA
LOC_Os08g29854
Os.52386.2.S1_x_at--1158--411Chr08:18225849..18225873 (25 bp)
ATCTTGTATCGATTGGTTCCGTTTA
LOC_Os08g29854
Os.52386.2.S1_x_at--741--6331Chr08:18225891..18225915 (25 bp)
GATGCATTTTTTGACCTGTACACTC
LOC_Os08g29854
Os.52386.2.S1_x_at--838--2651Chr08:18225979..18226003 (25 bp)
AAGCCTTCAGTGCATAGGTGTCCTT
LOC_Os08g29854
Os.52386.2.S1_x_at--992--6591Chr08:18226017..18226041 (25 bp)
GATTGAGCATTTTCATCAGACCGAT
LOC_Os08g29854
Os.52386.2.S1_x_at--115--7811Chr08:18226085..18226109 (25 bp)
GGTCTGTGCCAGAAATACCAGTACA
LOC_Os08g29854
Os.52386.2.S1_x_at--1127--8611Chr08:18226122..18226146 (25 bp)
TGGTGTGATTTGCTTTTCTATTGGA
LOC_Os08g29854
Target Sequence 
GGAATTTCCAAGCAGATCCGTGAATAGGAGAGCAAATCCAGTCAGAGTTGCCTTCAGGGTGAGGGCAGATCGGAGAAACA
GGAATAGGACTAGGAGAAATAGAATCACTGCACCATCCGCATCAACTTAGGGTTCATTCTTATGAGTGTTCTGAGTCTGA
ATTCTGAAAAGACCATCAAATACAGAGGAAAAAAGATGCTGTAATCTTGTATCGATTGGTTCCGTTTATATATCGATTTG
TCAGTGATGCATTTTTTGACCTGTACACTCAAGATCAAGAAGGAAGTCACGAAGCATTAGAATTCAGAACTCAGAAGTGA
ACCAAATGAAGATAAGCCTTCAGTGCATAGGTGTCCTTGCAAATGGATGCAGATTGAGCATTTTCATCAGACCGATTACA
ATCAGAAGGATATTATATGTTCGTGTTATAAGAAGGCACGGTCTGTGCCAGAAATACCAGTACATAGATATTCTTTTGGT
GTGATTTGCTTTTCTATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52386.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis