Browse Element(s) Details


Os.23364.1.S1_a_at

Description gb:AK063348.1
DB_XREF= gi:32973366
TID=Os.23364.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B10, full insert sequence.
FL= gb:AK063348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2980911/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29760Os.18220.1.S1_at11/118+18159012..18166880expressed protein
LOC_Os08g29760Os.12400.2.S1_x_at1/118+18159012..18166880expressed protein
LOC_Os08g29770Os.53285.1.S1_x_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29770OsAffx.17231.1.S1_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29780Os.54411.1.A1_at10/118+18176419..18179300expressed protein
LOC_Os08g29790OsAffx.30582.1.S1_s_at10/118+18180512..18181212hypothetical protein
LOC_Os08g29809Os.23364.1.S1_a_at11/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.23364.2.S1_a_at10/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.8905.1.S1_at3/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29830NANA8+18201514..18203261transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g29840Os.46012.2.S1_x_at5/118+18205118..18209361retrotransposon protein, putative, unclassified
LOC_Os08g29840Os.46012.3.S1_x_at4/118+18205118..18209361retrotransposon protein, putative, unclassified
LOC_Os08g29840Os.27088.1.A1_x_at2/118+18205118..18209361retrotransposon protein, putative, unclassified
LOC_Os08g29854Os.52386.2.S1_x_at10/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29854OsAffx.278.1.S1_at1/118+18213023..18226195NB-ARC domain containing protein, expressed
LOC_Os08g29854OsAffx.17191.1.S1_at1/118+18213023..18226195NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23364.1.S1_a_at--566--8471Chr08:18196433..18196457 (25 bp)
TGGCGAGCATCGTCGAGCTGCTGAC
LOC_Os08g29809
Os.23364.1.S1_a_at--741--2931Chr08:18196384..18196408 (25 bp)
AAGGCAGCTCCGGATCGTGTCCATC
LOC_Os08g29809
Os.23364.1.S1_a_at--686--9531Chr08:18196361..18196385 (25 bp)
TCTTTGGCCCTGGAGGTCTAGGCAA
LOC_Os08g29809
Os.23364.1.S1_a_at--1018--9571Chr08:18196330..18196354 (25 bp)
TCTTGCCAATCAGGTGCACCGCAAA
LOC_Os08g29809
Os.23364.1.S1_a_at--712--8931Chr08:18196316..18196340 (25 bp)
TGCACCGCAAAATCAAAGGCCAATT
LOC_Os08g29809
Os.23364.1.S1_a_at--42--891Chr08:18196300..18196324 (25 bp)
AGGCCAATTTGACTATGCTGCTCTG
LOC_Os08g29809
Os.23364.1.S1_a_at--7--7751Chr08:18196276..18196300 (25 bp)
GGTGTCTGTGTCTCAAAGGCCAATC
LOC_Os08g29809
Os.23364.1.S1_a_at--246--8451Chr08:18196259..18196283 (25 bp)
GGCCAATCAGGGACATTTTGACCAA
LOC_Os08g29809
Os.23364.1.S1_a_at--943--10251Chr08:18196243..18196267 (25 bp)
TTTGACCAAGATTGCTCCTTCAGTC
LOC_Os08g29809
Os.23364.1.S1_a_at--1097--1151Chr08:18196222..18196246 (25 bp)
AGTCATCCCAACTGACAGCAGCAGC
LOC_Os08g29809
Os.23364.1.S1_a_at--108--6831Chr08:18196196..18196220 (25 bp)
GTTTAGATACATGCCAACTCATCGA
LOC_Os08g29809
Target Sequence 
TGGCGAGCATCGTCGAGCTGCTGACCATGGAAGAAGACGAGTCGTCGGCAAGGCAGCTCCGGATCGTGTCCATCTTTGGC
CCTGGAGGTCTAGGCAAGACTACTCTTGCCAATCAGGTGCACCGCAAAATCAAAGGCCAATTTGACTATGCTGCTCTGGT
GTCTGTGTCTCAAAGGCCAATCAGGGACATTTTGACCAAGATTGCTCCTTCAGTCATCCCAACTGACAGCAGCAGCAGTT
TAGATACATGCCAACTCATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23364.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis