Browse Element(s) Details


OsAffx.17231.1.S1_at

Description tigr:9636.m02959
TID=OsAffx.17231.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cellulase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2977011/11Endoglucanase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29750OsAffx.29424.1.S1_at10/118+18150187..18151176hypothetical protein
LOC_Os08g29750Os.27362.1.S1_at1/118+18150187..18151176hypothetical protein
LOC_Os08g29760Os.18220.1.S1_at11/118+18159012..18166880expressed protein
LOC_Os08g29760Os.12400.2.S1_x_at1/118+18159012..18166880expressed protein
LOC_Os08g29770Os.53285.1.S1_x_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29770OsAffx.17231.1.S1_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29780Os.54411.1.A1_at10/118+18176419..18179300expressed protein
LOC_Os08g29790OsAffx.30582.1.S1_s_at10/118+18180512..18181212hypothetical protein
LOC_Os08g29809Os.23364.1.S1_a_at11/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.23364.2.S1_a_at10/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.8905.1.S1_at3/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29830NANA8+18201514..18203261transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17231.1.S1_at--192--2191Chr08:18176636..18176660 (25 bp)
ACAAACGTGTTGCAGTATTCCAGAA
LOC_Os08g29770
OsAffx.17231.1.S1_at--345--5671Chr08:18176684..18176708 (25 bp)
GACATGATCTATTTTCCACTGCCAA
LOC_Os08g29770
OsAffx.17231.1.S1_at--1055--10271Chr08:18176772..18176796 (25 bp)
TTTGCTTCTGCCCATTAGATGTCAA
LOC_Os08g29770
OsAffx.17231.1.S1_at--639--3171Chr08:18176809..18176833 (25 bp)
AATTGTTCAATCCATGAGCCAGCCA
LOC_Os08g29770
OsAffx.17231.1.S1_at--55--5871Chr08:18176824..18176848 (25 bp)
GAGCCAGCCAAAGATGCCCAGTTCA
LOC_Os08g29770
OsAffx.17231.1.S1_at--1044--1211Chr08:18176843..18176867 (25 bp)
AGTTCACGGCAGTACCCACAAGAAG
LOC_Os08g29770
OsAffx.17231.1.S1_at--34--9391Chr08:18176926..18176950 (25 bp)
TCGTATCTATTCAAAGGCCACCCTG
LOC_Os08g29770
OsAffx.17231.1.S1_at--501--5691Chr08:18176952..18176976 (25 bp)
GACTTCAGCCATGGTCTTCAGGAAT
LOC_Os08g29770
OsAffx.17231.1.S1_at--526--9311Chr08:18176998..18177022 (25 bp)
TCCCGGCTTCTAATTGACCATGCTG
LOC_Os08g29770
OsAffx.17231.1.S1_at--988--1931Chr08:18177029..18177053 (25 bp)
ACTGGACGTCAGCTGGGACCATATT
LOC_Os08g29770
OsAffx.17231.1.S1_at--909--8631Chr08:18177042..18177066 (25 bp)
TGGGACCATATTGAGCTCTTCACGA
LOC_Os08g29770
Target Sequence 
ACAAACGTGTTGCAGTATTCCAGAAATAACTGGAATTTAAACAACAAGGACATGATCTATTTTCCACTGCCAATTCTGTT
GTTAAGTGTTTTGTTTTGTTTTATTTCTTTTCTTTCTTTGTTTGTTTCCTTTTTCTTTTGCTTCTGCCCATTAGATGTCA
AAATGGACCATTAAATTGTTCAATCCATGAGCCAGCCAAAGATGCCCAGTTCACGGCAGTACCCACAAGAAGCTCCCAGA
ACCAAAGATCCACTGCGAGAACTGAAGAAAAGATAAGCAGAGCAAGTGTCTCGTATCTATTCAAAGGCCACCCTGAGACT
TCAGCCATGGTCTTCAGGAATGGAAGAGATTCCCTGTCTAGCTCCCGGCTTCTAATTGACCATGCTGTCACCCACTGGAC
GTCAGCTGGGACCATATTGAGCTCTTCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis