Browse Element(s) Details


Os.54411.1.A1_at

Description gb:AK105106.1
DB_XREF= gi:32990315
TID=Os.54411.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E10, full insert sequence.
FL= gb:AK105106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2978010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29760Os.18220.1.S1_at11/118+18159012..18166880expressed protein
LOC_Os08g29760Os.12400.2.S1_x_at1/118+18159012..18166880expressed protein
LOC_Os08g29770Os.53285.1.S1_x_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29770OsAffx.17231.1.S1_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29780Os.54411.1.A1_at10/118+18176419..18179300expressed protein
LOC_Os08g29790OsAffx.30582.1.S1_s_at10/118+18180512..18181212hypothetical protein
LOC_Os08g29809Os.23364.1.S1_a_at11/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.23364.2.S1_a_at10/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.8905.1.S1_at3/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29830NANA8+18201514..18203261transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54411.1.A1_at--1055--7631Chr08:18176977..18177001 (25 bp)
GGGAGCTAGACAGGGAATCTCTTCC
LOC_Os08g29780
Os.54411.1.A1_at--1070--5311Chr08:18176933..18176957 (25 bp)
GAAGTCTCAGGGTGGCCTTTGAATA
LOC_Os08g29780
Os.54411.1.A1_at--721--10371Chr08:18176882..18176906 (25 bp)
TTTTCTTCAGTTCTCGCAGTGGATC
LOC_Os08g29780
Os.54411.1.A1_at--1109--1091Chr08:18176865..18176889 (25 bp)
AGTGGATCTTTGGTTCTGGGAGCTT
LOC_Os08g29780
Os.54411.1.A1_at--329--10551Chr08:18176842..18176866 (25 bp)
TTCTTGTGGGTACTGCCGTGAACTG
LOC_Os08g29780
Os.54411.1.A1_at--350--7011Chr08:18176833..18176857 (25 bp)
GTACTGCCGTGAACTGGGCATCTTT
LOC_Os08g29780
Os.54411.1.A1_at--112--451Chr08:18176814..18176838 (25 bp)
ATCTTTGGCTGGCTCATGGATTGAA
LOC_Os08g29780
Os.54411.1.A1_at--890--2251Chr08:18176673..18176697 (25 bp)
AAATAGATCATGTCCTTGTTGTTTA
LOC_Os08g29780
Os.54411.1.A1_at--497--10611Chr08:18176636..18176660 (25 bp)
TTCTGGAATACTGCAACACGTTTGT
LOC_Os08g29780
Os.54411.1.A1_at--293--7311Chr08:18176540..18176564 (25 bp)
GTGCTGGATTTTGCATCTGGAATTT
LOC_Os08g29780
Os.54411.1.A1_at--793--9791NONE
TAAGCCCTGATGTTACAAGCGCAAT
NONE
Target Sequence 
GGGAGCTAGACAGGGAATCTCTTCCANTCCTGAAGACCATGGCTGAAGTCTCAGGGTGGCCTTTGAATAGATACGAGACA
CNTGCTCTGCTTATCTTTTCTTCAGTTCTCGCAGTGGATCTTTGGTTCTGGGAGCTTCTTGTGGGTACTGCCGTGAACTG
GGCATCTTTGGCTGGCTCATGGATTGAACAATTTAATGGTCCATTTTGACATCTAATGGGCAGAAGCNAAAGAAAAAGGA
ANCAANCAAAGAAAGAAAAGAAATAAANCAAANCAAAACACTTAACAACAGAATTGGCAGTGGAAAATAGATCATGTCCT
TGTTGTTTAAATTCCAGTTATTTCTGGAATACTGCAACACGTTTGTATATAACCATTTGTTGGATCAAACTGGAATGAGT
TTAAATGAAAATTGTCANGCTACATGATGCAATATTTGTGCTGGATTTTGCATCTGGAATTTTGGTCAGCAGATATAGTT
GGTATGAACTTATGGTATTTATTTATTATCATGTGGTACCCCCTGATAAGGAGCTGGGATATATTACAAGTAAGCCCTGA
TGTTACAAGCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54411.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis