Browse Element(s) Details


Os.18220.1.S1_at

Description gb:AK120787.1
DB_XREF= gi:37990410
TID=Os.18220.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011G24, full insert sequence.
FL= gb:AK120787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2976011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29730Os.8737.1.S1_at11/118+18132809..18136710expressed protein
LOC_Os08g29740OsAffx.5980.1.S1_at9/118+18138427..18140983hypothetical protein
LOC_Os08g29750OsAffx.29424.1.S1_at10/118+18150187..18151176hypothetical protein
LOC_Os08g29750Os.27362.1.S1_at1/118+18150187..18151176hypothetical protein
LOC_Os08g29760Os.18220.1.S1_at11/118+18159012..18166880expressed protein
LOC_Os08g29760Os.12400.2.S1_x_at1/118+18159012..18166880expressed protein
LOC_Os08g29770Os.53285.1.S1_x_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29770OsAffx.17231.1.S1_at11/118+18172524..18177096Endoglucanase precursor, putative, expressed
LOC_Os08g29780Os.54411.1.A1_at10/118+18176419..18179300expressed protein
LOC_Os08g29790OsAffx.30582.1.S1_s_at10/118+18180512..18181212hypothetical protein
LOC_Os08g29809Os.23364.1.S1_a_at11/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.23364.2.S1_a_at10/118+18186256..18197071NB-ARC domain containing protein, expressed
LOC_Os08g29809Os.8905.1.S1_at3/118+18186256..18197071NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18220.1.S1_at--60--232Chr08:18166315..18166339 (25 bp)
ATAAATCTAAACATCCACCCAAAAT
LOC_Os08g29760
Os.18220.1.S1_at--83--5671Chr08:18166378..18166402 (25 bp)
GACATGTGAACTCTCCTACAGCAAG
LOC_Os08g29760
Os.18220.1.S1_at--938--3391Chr08:18166396..18166420 (25 bp)
CAGCAAGTAGTAGTACGTCCATAAA
LOC_Os08g29760
Os.18220.1.S1_at--929--6991Chr08:18166408..18166432 (25 bp)
GTACGTCCATAAAGCTGTGAACTGT
LOC_Os08g29760
Os.18220.1.S1_at--509--7351Chr08:18166492..18166516 (25 bp)
GTGAATTTATATTTGTGCCGGCTAA
LOC_Os08g29760
Os.18220.1.S1_at--977--6671Chr08:18166545..18166569 (25 bp)
GTTGCGAATGTGCTTATCTTTGAAA
LOC_Os08g29760
Os.18220.1.S1_at--167--6491Chr08:18166595..18166619 (25 bp)
GATAGCTGAGCTATGGATTGCTAAC
LOC_Os08g29760
Os.18220.1.S1_at--404--68923Chr09:10349432..10349456 (25 bp)
GTATAGTGGTGAGTATTCCCGCCTG
NONE
Os.18220.1.S1_at--246--5111Chr08:18166689..18166713 (25 bp)
GCAACGGCGTTTCTCATGTTTTTTA
LOC_Os08g29760
Os.18220.1.S1_at--430--10351Chr08:18166707..18166731 (25 bp)
TTTTTTATTTCCACTCCCTGTAATG
LOC_Os08g29760
Os.18220.1.S1_at--92--8771Chr08:18166851..18166875 (25 bp)
TGTTTCCCCTCCCTGTAACGTATGT
LOC_Os08g29760
Target Sequence 
ATAAATCTAAACATCCACCCAAAATCCCTATAGGACGGGACTAGTAGTTTTTTTAGGTGTTCAGACATGTGAACTCTCCT
ACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATNACAAGAGCNGGTCCNNTNTNTTGNTNATTT
TTACTGGTTTCAGTGTAGTGAATTTATATTTGTGCCGGCTAANTTGACCTGAAAATATAAGGGATCGAACNGTTGCGAAT
GTGCTTATCTTTGAAATGGAACTTGATTACGATGGTAAAGTGATAGCTGAGCTATGGATTGCTAACAANAAGGTCGTTGT
AGTATAGTGGTGAGTATTCCCGCCTGTCACGCCGGTGTCCCGGGTTCGATCCCCGGCAACGGCGTTTCTCATGTTTTTTA
TTTCCACTCCCTGTAATGTNAAAATTTTCANTTATTTTGGACATATATTGGTCCAANTAAGTTGTTTCCCCCTTTTTTCC
ACTCCCTGTAATGTNAAAATATTCATTTATTTTGGACATATATTGGTCCAGTTAAGTTGTTTCCCCTCCCTGTAACGTAT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis