Browse Element(s) Details


OsAffx.17234.1.S1_at

Description tigr:9636.m02980
TID=OsAffx.17234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2996010/11hypothetical protein
LOC_Os12g175801/11transposon protein, putative, unclassified
LOC_Os06g039201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29910NANA8+18244101..18246661prenyltransferase, UbiA family protein
LOC_Os08g29920NANA8+18249209..18252123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29930Os.10703.2.S1_x_at1/118+18252439..18258549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29940OsAffx.5983.1.S1_at11/118+18261707..18262076hypothetical protein
LOC_Os08g29950OsAffx.17233.1.S1_at11/118+18265521..18267996hypothetical protein
LOC_Os08g29960OsAffx.17234.1.S1_at10/118+18269271..18270366hypothetical protein
LOC_Os08g29970NANA8+18272835..18274766Para-hydroxybenzoate-polyprenyltransferase, mitochondrial precursor, putative
LOC_Os08g29980Os.49832.1.S1_at11/118+18281927..18286755retrotransposon protein, putative, unclassified, expressed
LOC_Os08g29990NANA8+18288733..18294595retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17234.1.S1_at--5--3671Chr08:18270305..18270329 (25 bp)
CTTACTCGTCGCCATATGCAATTGG
LOC_Os08g29960
OsAffx.17234.1.S1_at--664--10851Chr08:18270278..18270302 (25 bp)
TTGGTGCACTATCTTACTATCTGGA
LOC_Os08g29960
OsAffx.17234.1.S1_at--855--10472Chr02:27624257..27624297 (25 bp)
TTACTATCTGGAAACGCCGCAACAA
NONE
OsAffx.17234.1.S1_at--593--2193Chr11:11127075..11127280 (25 bp)
ACAACAAGGGTTACGGGTCAGGCAT
NONE
OsAffx.17234.1.S1_at--906--9951Chr08:18269441..18269465 (25 bp)
TACCCCTCGATATACACTACGTATC
LOC_Os08g29960
OsAffx.17234.1.S1_at--1129--99115Chr07:11517646..11517670 (25 bp)
TACGTATCGACATGGCATACCCACG
NONE
OsAffx.17234.1.S1_at--369--4592Chr06:1580195..1580214 (20 bp)
GCGCACACGGATATTCCCTTATGAT
LOC_Os06g03920
OsAffx.17234.1.S1_at--483--8151Chr08:18269371..18269395 (25 bp)
GGAAACCTTTCACGAATTCAATAGA
LOC_Os08g29960
OsAffx.17234.1.S1_at--871--5351Chr08:18269343..18269367 (25 bp)
GAAGAGTCCTTCTCGAACAAGAACT
LOC_Os08g29960
OsAffx.17234.1.S1_at--284--6671Chr08:18269316..18269340 (25 bp)
GTTGCCAACGTATCGTGCCGGGTTT
LOC_Os08g29960
OsAffx.17234.1.S1_at--486--9011Chr08:18269301..18269325 (25 bp)
TGCCGGGTTTGATATGTTCGAGTCC
LOC_Os08g29960
Target Sequence 
CTTACTCGTCGCCATATGCAATTGGACTTGGTGCACTATCTTACTATCTGGAAACGCCGCAACAACAAGGGTTACGGGTC
AGGCATACCCTCTACCCCTCGATATACACTACGTATCGACATGGCATACCCACGCGCACACGGATATTCCCTTATGATCT
AAGGAAACCTTTCACGAATTCAATAGATGAGAAGAGTCCTTCTCGAACAAGAACTGGGTTGCCAACGTATCGTGCCGGGT
TTGATATGTTCGAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis