Browse Element(s) Details


Os.49832.1.S1_at

Description gb:AK111829.1
DB_XREF= gi:37988492
TID=Os.49832.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073M14, full insert sequence.
FL= gb:AK111829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2998011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g257202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29930Os.10703.2.S1_x_at1/118+18252439..18258549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29940OsAffx.5983.1.S1_at11/118+18261707..18262076hypothetical protein
LOC_Os08g29950OsAffx.17233.1.S1_at11/118+18265521..18267996hypothetical protein
LOC_Os08g29960OsAffx.17234.1.S1_at10/118+18269271..18270366hypothetical protein
LOC_Os08g29970NANA8+18272835..18274766Para-hydroxybenzoate-polyprenyltransferase, mitochondrial precursor, putative
LOC_Os08g29980Os.49832.1.S1_at11/118+18281927..18286755retrotransposon protein, putative, unclassified, expressed
LOC_Os08g29990NANA8+18288733..18294595retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29999NANA8+18295883..18297205NA
LOC_Os08g30010NANA8+18299898..18305602retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49832.1.S1_at--324--8431Chr08:18282464..18282488 (25 bp)
GGCCTCCACCACAACTCAAGATGGA
LOC_Os08g29980
Os.49832.1.S1_at--1153--3011Chr08:18282427..18282451 (25 bp)
AATCGCCCTCAGCAAGAATCCGGTA
LOC_Os08g29980
Os.49832.1.S1_at--1121--3011Chr08:18282411..18282435 (25 bp)
AATCCGGTACTTCACGATCGATCTA
LOC_Os08g29980
Os.49832.1.S1_at--447--2671Chr08:18282372..18282396 (25 bp)
AAGTTTCATTTTCTTCGTGAGTGCG
LOC_Os08g29980
Os.49832.1.S1_at--738--5671Chr08:18282294..18282318 (25 bp)
GACATCATGACGAAGGCGCTCGGGA
LOC_Os08g29980
Os.49832.1.S1_at--311--891Chr08:18282281..18282305 (25 bp)
AGGCGCTCGGGAGGTCCAAGTTTCA
LOC_Os08g29980
Os.49832.1.S1_at--267--9731Chr08:18282224..18282248 (25 bp)
TCAAGTGAACGACGCCGGTGCTTAA
LOC_Os08g29980
Os.49832.1.S1_at--1024--6572Chr06:25277204..25277225 (22 bp)
GATTGTTGAATAAACCCCGGCGCGT
NONE
Os.49832.1.S1_at--812--4193Chr06:25277216..25277240 (25 bp)
CCCGGCGCGTTCTAGTTAGGATAGT
NONE
Os.49832.1.S1_at--898--6074Chr06:25277246..25277270 (25 bp)
GAGTTTCCTTGTTTTCAGCTGAGCC
NONE
Os.49832.1.S1_at--1015--9454Chr06:25277326..25277350 (25 bp)
TCTGGTAGTCGTGAGCGAGTCTCGC
NONE
Target Sequence 
GGCCTCCACCACAACTCAAGATGGACAACCAGTCTGCAATCGCCCTCAGCAAGAATCCGGTACTTCACGATCGATCTAAG
CATATTGATACAAAGTTTCATTTTCTTCGTGAGTGCGTGGATAGTGGGGCGGTGCGCCTGGCGTTCGTGAGCACCCAAGC
GCAGCTCGCGGACATCATGACGAAGGCGCTCGGGAGGTCCAAGTTTCAGGAGCTTCGCGAGCTGATCGGCGTCACCAAGC
TCAAGTGAACGACGCCGGTGCTTAAGGGGAGATTGTTGAATAAACCCCGGCGCGTTCTAGTTAGGATAGTTAGTTGAGTT
TCCTTGTTTTCAGCTGAGCCCGAGTTTTGGGCGCGTCTTGTACAGAGGCTCGACGTGTGCACGTTCACGCGGGAGTCTGG
TAGTCGTGAGCGAGTCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis