Browse Element(s) Details


Os.11629.1.S1_at

Description gb:AK065986.1
DB_XREF= gi:32976004
TID=Os.11629.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043C13, full insert sequence.
FL= gb:AK061717.1 gb:AK065986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0271011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02690OsAffx.17541.1.S1_at11/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.20501.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.5983.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02700Os.38226.1.S1_at11/119+1211953..1217009Polyadenylate-binding protein 2, putative, expressed
LOC_Os09g02710OsAffx.29695.1.S1_s_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710OsAffx.29695.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710Os.11629.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02729Os.11389.1.S1_at11/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02729OsAffx.15516.1.S1_at1/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02750OsAffx.17542.1.S1_at10/119+1239588..1242978expressed protein
LOC_Os09g02750Os.6901.1.S1_at2/119+1239588..1242978expressed protein
LOC_Os09g02760OsAffx.19542.3.S1_x_at7/119+1247567..1251789retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11629.1.S1_at--459--7091Chr09:1220533..1220557 (25 bp)
GTCAGAGCTGCCCTCAAAATAAAGA
LOC_Os09g02710
Os.11629.1.S1_at--182--3591Chr09:1220455..1220479 (25 bp)
CATTTCTGGGACTGCAGTCACTTGG
LOC_Os09g02710
Os.11629.1.S1_at--1119--7611Chr09:1220448..1220472 (25 bp)
GGGACTGCAGTCACTTGGAAATTTA
LOC_Os09g02710
Os.11629.1.S1_at--191--8151Chr09:1220432..1220456 (25 bp)
GGAAATTTAGTCCACTGAAACATTA
LOC_Os09g02710
Os.11629.1.S1_at--1136--2271Chr09:1220400..1220424 (25 bp)
AAATGAACTACATCAGCCTTACAGA
LOC_Os09g02710
Os.11629.1.S1_at--508--1671Chr09:1220386..1220410 (25 bp)
AGCCTTACAGATACTGCGAATTCGA
LOC_Os09g02710
Os.11629.1.S1_at--626--5211Chr09:1220369..1220393 (25 bp)
GAATTCGACAGTCAATTCTTCTTGG
LOC_Os09g02710
Os.11629.1.S1_at--649--231Chr09:1220310..1220334 (25 bp)
ATATTTGGAATATAGCCGCAATCTG
LOC_Os09g02710
Os.11629.1.S1_at--933--7551Chr09:1220281..1220305 (25 bp)
GGGCCACCAGATTTGGTCGCCTCTC
LOC_Os09g02710
Os.11629.1.S1_at--1026--7231Chr09:1220266..1220290 (25 bp)
GTCGCCTCTCCTTATTAGGTAGCAT
LOC_Os09g02710
Os.11629.1.S1_at--517--711Chr09:1220152..1220176 (25 bp)
ATGATGATACCTTCCGCATCTGGGT
LOC_Os09g02710
Target Sequence 
GTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGACAGTGTAGATGATTCTTTATAAGNCA
TTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATA
CTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCC
GCAATCTGTTTGGGGCCACCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACATGGAGAATGTTATTATTTTTATTT
TTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACACNTTCTGATATGATGATACCTTCCGCA
TCTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis