Browse Element(s) Details


OsAffx.17541.1.S1_at

Description tigr:9637.m00113
TID=OsAffx.17541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0269011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02660Os.53142.1.S1_at2/119+1167868..1174665retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g02660Os.32650.1.S1_at1/119+1167868..1174665retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g02670OsAffx.17540.1.S1_at11/119+1184261..1184536hypothetical protein
LOC_Os09g02680OsAffx.7216.1.S1_at1/119+1188403..1192805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02680OsAffx.17842.1.S1_at1/119+1188403..1192805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02690OsAffx.17541.1.S1_at11/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.20501.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.5983.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02700Os.38226.1.S1_at11/119+1211953..1217009Polyadenylate-binding protein 2, putative, expressed
LOC_Os09g02710OsAffx.29695.1.S1_s_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710OsAffx.29695.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710Os.11629.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02729Os.11389.1.S1_at11/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02729OsAffx.15516.1.S1_at1/119+1225555..1237527MAP3K-like protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17541.1.S1_at--1140--8991Chr09:1198599..1198623 (25 bp)
TGAAGTGCCAGCTGCTGCATCTGAG
LOC_Os09g02690
OsAffx.17541.1.S1_at--217--3851Chr09:1198585..1198609 (25 bp)
CTGCATCTGAGCCAGCCAAAGTTGT
LOC_Os09g02690
OsAffx.17541.1.S1_at--268--4371Chr09:1198570..1198594 (25 bp)
CCAAAGTTGTAGCAGCAGTGGCCGA
LOC_Os09g02690
OsAffx.17541.1.S1_at--108--5031Chr09:1198556..1198580 (25 bp)
GCAGTGGCCGATGAGATGCCCGATT
LOC_Os09g02690
OsAffx.17541.1.S1_at--455--6351Chr09:1198542..1198566 (25 bp)
GATGCCCGATTCTACAACTTCAGTG
LOC_Os09g02690
OsAffx.17541.1.S1_at--1104--1551Chr09:1198500..1198524 (25 bp)
AGCTAGACATACTGCCTCAACAAGG
LOC_Os09g02690
OsAffx.17541.1.S1_at--289--2951Chr09:1198479..1198503 (25 bp)
AAGGCGCCCATGCTATGGATGGCTT
LOC_Os09g02690
OsAffx.17541.1.S1_at--84--6131Chr09:1198417..1198441 (25 bp)
GAGTGTCAGCTGTTGAGCAATCTAA
LOC_Os09g02690
OsAffx.17541.1.S1_at--77--9771Chr09:1198395..1198419 (25 bp)
TAATCCTCCATCTGCTACGAATCAT
LOC_Os09g02690
OsAffx.17541.1.S1_at--913--3571Chr09:1198351..1198375 (25 bp)
CATATGTTGAGCAAGCAAGGCCTTC
LOC_Os09g02690
OsAffx.17541.1.S1_at--567--2011Chr09:1198295..1198319 (25 bp)
ACTCATCATAGAGGGATGCTCTCAA
LOC_Os09g02690
Target Sequence 
TGAAGTGCCAGCTGCTGCATCTGAGCCAGCCAAAGTTGTAGCAGCAGTGGCCGATGAGATGCCCGATTCTACAACTTCAG
TGCCACTCCCTATCACTGCAGCTAGACATACTGCCTCAACAAGGCGCCCATGCTATGGATGGCTTATTGAGAGTGAATCC
GAGGATGATGAATTGGACAATGGAGTGTCAGCTGTTGAGCAATCTAATCCTCCATCTGCTACGAATCATAAGATGAGTAA
TGGATGGTCATATGTTGAGCAAGCAAGGCCTTCAGTTGCTATGAGACATGAAATGGAACCATATACTCATCATAGAGGGA
TGCTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis