Browse Element(s) Details


OsAffx.17540.1.S1_at

Description tigr:9637.m00111
TID=OsAffx.17540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0267011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02650Os.22630.1.S1_at11/119+1157082..1166873kinesin, putative, expressed
LOC_Os09g02660Os.53142.1.S1_at2/119+1167868..1174665retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g02660Os.32650.1.S1_at1/119+1167868..1174665retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g02670OsAffx.17540.1.S1_at11/119+1184261..1184536hypothetical protein
LOC_Os09g02680OsAffx.7216.1.S1_at1/119+1188403..1192805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02680OsAffx.17842.1.S1_at1/119+1188403..1192805retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02690OsAffx.17541.1.S1_at11/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.20501.1.S1_at1/119+1198227..1210378expressed protein
LOC_Os09g02690OsAffx.5983.1.S1_at1/119+1198227..1210378expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17540.1.S1_at--462--3051Chr09:1184480..1184504 (25 bp)
AATCGTAGAGATGCATGAGGTACCT
LOC_Os09g02670
OsAffx.17540.1.S1_at--430--8892Chr09:1184465..1184489 (25 bp)
TGAGGTACCTGCTGAGGCTGAACCC
LOC_Os09g02670
OsAffx.17540.1.S1_at--177--9111Chr09:1184456..1184480 (25 bp)
TGCTGAGGCTGAACCCACAGTTGAG
LOC_Os09g02670
OsAffx.17540.1.S1_at--604--2611Chr09:1184445..1184469 (25 bp)
AACCCACAGTTGAGGACATGCAGGA
LOC_Os09g02670
OsAffx.17540.1.S1_at--617--5051Chr09:1184405..1184429 (25 bp)
GCAGAAGGAAGAACAGCTCCAGCTG
LOC_Os09g02670
OsAffx.17540.1.S1_at--738--3391Chr09:1184386..1184410 (25 bp)
CAGCTGCAGCTGTTTCAACAGGAAG
LOC_Os09g02670
OsAffx.17540.1.S1_at--661--2771Chr09:1184352..1184376 (25 bp)
AAGACCAACAGCCTCAGGTGGTTCG
LOC_Os09g02670
OsAffx.17540.1.S1_at--65--2491Chr09:1184346..1184370 (25 bp)
AACAGCCTCAGGTGGTTCGCTCTCT
LOC_Os09g02670
OsAffx.17540.1.S1_at--173--7911Chr09:1184333..1184357 (25 bp)
GGTTCGCTCTCTTTCATTTAATTTG
LOC_Os09g02670
OsAffx.17540.1.S1_at--54--4951Chr09:1184306..1184330 (25 bp)
GCATTCATTTCTTGATGATCATCCA
LOC_Os09g02670
OsAffx.17540.1.S1_at--252--8851Chr09:1184291..1184315 (25 bp)
TGATCATCCAATTCTCATGCTTCAT
LOC_Os09g02670
Target Sequence 
AATCGTAGAGATGCATGAGGTACCTGCTGAGGCTGAACCCACAGTTGAGGACATGCAGGAGGCGCTCTTCCAGAAGCAGA
AGGAAGAACAGCTCCAGCTGCAGCTGTTTCAACAGGAAGAGGAACTGGAAGACCAACAGCCTCAGGTGGTTCGCTCTCTT
TCATTTAATTTGATGCATTCATTTCTTGATGATCATCCAATTCTCATGCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis