Browse Element(s) Details


Os.32650.1.S1_at

Description gb:AK103378.1
DB_XREF= gi:32988587
TID=Os.32650.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127E04, full insert sequence.
FL= gb:AK103378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4657011/11transducin family protein, putative, expressed
LOC_Os09g026601/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os05g46590OsAffx.15129.1.S1_at11/115+26889094..26889699hypothetical protein
LOC_Os05g46600OsAffx.27341.1.S1_at11/115+26890405..26891228hypothetical protein
LOC_Os05g46610OsAffx.4639.1.S1_at11/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46610Os.57514.1.S1_x_at1/115+26904201..26905534Myb-related protein Hv33, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32650.1.S1_at--447--3291Chr05:26881390..26881410 (21 bp)
CAAAGGTCCCTTTGACACTTTCTTG
LOC_Os05g46570
Os.32650.1.S1_at--1108--7531Chr05:26881629..26881653 (25 bp)
GTGGCTTTAGTCTGGAGTCATCTCC
LOC_Os05g46570
Os.32650.1.S1_at--104--5411Chr05:26881667..26881691 (25 bp)
GAAGCTGCTTTTACTCCAGATGGCC
LOC_Os05g46570
Os.32650.1.S1_at--412--6251Chr05:26882160..26882184 (25 bp)
GATGGTACCTTGCATGCTTGGAACA
LOC_Os05g46570
Os.32650.1.S1_at--597--6611Chr05:26882276..26882300 (25 bp)
GTTGGAACAGTCACATCGGTCCTAT
LOC_Os05g46570
Os.32650.1.S1_at--483--491Chr05:26882290..26882314 (25 bp)
ATCGGTCCTATCACTGCTTTGAAGT
LOC_Os05g46570
Os.32650.1.S1_at--67--2991Chr05:26882331..26882355 (25 bp)
AATGTTTGCAACTGCGTCAACTGCC
LOC_Os05g46570
Os.32650.1.S1_at--586--7071Chr05:26882346..26882370 (25 bp)
GTCAACTGCCCTAACTTTCTGGATT
LOC_Os05g46570
Os.32650.1.S1_at--593--10632Chr05:26882379..26882403 (25 bp)
TTCCAGTTCGAATTAGGTGCCTAGC
LOC_Os05g46570
Os.32650.1.S1_at--228--10151Chr05:26882447..26882471 (25 bp)
TATCCTGTTCTTTCCTGCACAAGAT
LOC_Os05g46570
Os.32650.1.S1_at--450--711Chr05:26882522..26882546 (25 bp)
ATGATGATGTACACCTTCCCATTGT
LOC_Os05g46570
Target Sequence 
CAAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGT
CCATGCTTTTGACAACAACCAACAACCATATATATGTTCTGGATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTG
GAGTCATCTCCCAATGTAGCAACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTAC
CTTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGGTCCTATCACTGCTTTGAAGT
GGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGCCCTAACTTTCTGGATTCCCAANAATTCCAGTTCGAATTAG
GTGCCTAGCAAAAAGGATGGAACGTGNNATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGG
TATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACACCTTCCCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis