Browse Element(s) Details


Os.9759.2.S1_at

Description gb:AK105858.1
DB_XREF= gi:32991067
TID=Os.9759.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H08, full insert sequence.
FL= gb:AK071271.1 gb:AK105858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4651011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9759.2.S1_at--661--8371Chr05:26859555..26859579 (25 bp)
GGCGTCGGCGTTCTGCCACAGGGCG
LOC_Os05g46510
Os.9759.2.S1_at--670--4031Chr05:26859563..26859587 (25 bp)
CGTTCTGCCACAGGGCGTCCGGGAA
LOC_Os05g46510
Os.9759.2.S1_at--861--151Chr05:26859881..26859905 (25 bp)
ATTTTACCGGAGTTTCTGCTACTAG
LOC_Os05g46510
Os.9759.2.S1_at--1054--10351Chr05:26859882..26859906 (25 bp)
TTTTACCGGAGTTTCTGCTACTAGC
LOC_Os05g46510
Os.9759.2.S1_at--860--10331Chr05:26859883..26859907 (25 bp)
TTTACCGGAGTTTCTGCTACTAGCA
LOC_Os05g46510
Os.9759.2.S1_at--480--10451Chr05:26859884..26859908 (25 bp)
TTACCGGAGTTTCTGCTACTAGCAG
LOC_Os05g46510
Os.9759.2.S1_at--316--9971Chr05:26859885..26859909 (25 bp)
TACCGGAGTTTCTGCTACTAGCAGT
LOC_Os05g46510
Os.9759.2.S1_at--595--1771Chr05:26859886..26859910 (25 bp)
ACCGGAGTTTCTGCTACTAGCAGTG
LOC_Os05g46510
Os.9759.2.S1_at--18--3971Chr05:26859888..26859912 (25 bp)
CGGAGTTTCTGCTACTAGCAGTGAT
LOC_Os05g46510
Os.9759.2.S1_at--993--3811Chr05:26859896..26859921 (25 bp)
CTGCTACTAGCAGTGATGGCCGATG
LOC_Os05g46510
Os.9759.2.S1_at--223--9091Chr05:26859897..26859921 (24 bp)
TGCTACTAGCAGTGATGGCCGATGG
LOC_Os05g46510
Target Sequence 
GGCGTCGGCGTTCTGCCACAGGGCGTCCGGGAAGGCGGCCGGCGCCGTCGTGCCGGCGTCCTGCCTCGCCAAGGCGCCCC
ACAGGATGCTCGGCGACGCCACGCCGGCGGCCAGAGTCGGTTCTTGATCGCCGCCGGCAATGCCCGATCCTGGCAACGAT
CACCGGAAAAAAGCTGAAGTATAAATACCGTACACGTAGGTGTAGAAACTGTTGCCGTATTTGGGAGAGTGTATGAGTAC
AGAGAGTTGTAAGCTGTATACGACGTTTGTGTCAAGAATTTTTTAGAGGGCATTATGTGAAGTTAAAATGGATACAAAAA
AACATAATTTTACCGGAGTTTCTGCTACTAGCAGTGATGGCCGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9759.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis