Browse Element(s) Details


Os.23829.1.S1_at

Description gb:AK062488.1
DB_XREF= gi:32972506
TID=Os.23829.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-H03, full insert sequence.
FL= gb:AK062488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g464704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46420Os.5372.1.S1_at11/115+26816857..26818265expressed protein
LOC_Os05g46430Os.7054.2.S1_x_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_a_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46440OsAffx.27339.1.S1_s_at10/115+26823935..26824332expressed protein
LOC_Os05g46450OsAffx.27340.1.S1_at10/115+26824875..26827544expressed protein
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23829.1.S1_at--740--6831Chr05:26840013..26840037 (25 bp)
GTTTCAGTTGCATCCAGCATGAGCA
LOC_Os05g46470
Os.23829.1.S1_at--1159--7391Chr05:26839959..26839983 (25 bp)
GTGATCCTGCTACTGTTCGATTCAT
LOC_Os05g46470
Os.23829.1.S1_at--559--10631Chr05:26839804..26839968 (25 bp)
TTCGATTCATCGTCTTCAGGGCAAG
LOC_Os05g46470
Os.23829.1.S1_at--184--8551Chr05:26839256..26839280 (25 bp)
TGGAGGACCCAACCCTAGACATGAA
LOC_Os05g46470
Os.23829.1.S1_at--1025--5571Chr05:26839215..26839239 (25 bp)
GAAATGGACACTAATCGCCTCTTCT
NONE
Os.23829.1.S1_at--617--9551Chr05:26839196..26839220 (25 bp)
TCTTCTCCACACTGAAACCTTGACA
NONE
Os.23829.1.S1_at--1017--6471Chr05:26839160..26839184 (25 bp)
GATACTCAGATGATCCCAAATGCTA
NONE
Os.23829.1.S1_at--581--2991Chr05:26839142..26839166 (25 bp)
AATGCTACAATCACCAGACCACTAT
NONE
Os.23829.1.S1_at--609--7111Chr05:26839044..26839068 (25 bp)
GTCAGGTGCATGGAGTTCAGGTCAT
NONE
Os.23829.1.S1_at--474--7131Chr05:26839024..26839048 (25 bp)
GTCATTTTAGACAGTACCTGCGTGT
NONE
Os.23829.1.S1_at--59--4671Chr05:26839005..26839029 (25 bp)
GCGTGTATTCAGGTGTGTGCTTATA
NONE
Target Sequence 
GTTTCAGTTGCATCCAGCATGAGCAAGCTCAAGTTCTTGGTCACTGTCGTCCTCGTGATCCTGCTACTGTTCGATTCATC
GTCTTCAGGGCAAGCTGAGACAGCATATACCAATTATGAAGTGACTTCTAAAGTGAAAGAGAGAATTCAGAAACATAGCA
GGAGGGTTCTGACAGATGTTCAGGACTATGACTATGGAGGACCCAACCCTAGACATGAACCACGTAAGAAGCCTGGAAAT
GGACACTAATCGCCTCTTCTCCACACTGAAACCTTGACAAAGATAAGTCAGATACTCAGATGATCCCAAATGCTACAATC
ACCAGACCACTATCTTACTGTAATGTACTAGAATTAAGCAGAACTGTTAGGTACTATTGTGTCGTTAATTACCTTGTAAT
ATGTTGGTCAGGTGCATGGAGTTCAGGTCATTTTAGACAGTACCTGCGTGTATTCAGGTGTGTGCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis