Browse Element(s) Details


Os.5372.1.S1_at

Description gb:AK071854.1
DB_XREF= gi:32981877
TID=Os.5372.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023117P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117P14, full insert sequence.
FL= gb:AK071854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4642011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46370OsAffx.15125.1.S1_at11/115+26796628..26797872Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g46380Os.53994.1.S1_at11/115+26801686..26804062F-box domain containing protein, expressed
LOC_Os05g46390OsAffx.27337.1.S1_at11/115+26805728..26807332F-box domain containing protein
LOC_Os05g46420Os.5372.1.S1_at11/115+26816857..26818265expressed protein
LOC_Os05g46430Os.7054.2.S1_x_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_a_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46440OsAffx.27339.1.S1_s_at10/115+26823935..26824332expressed protein
LOC_Os05g46450OsAffx.27340.1.S1_at10/115+26824875..26827544expressed protein
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5372.1.S1_at--623--9291Chr05:26817678..26817702 (25 bp)
TCCGTATATCCGATGAGACATGCAA
LOC_Os05g46420
Os.5372.1.S1_at--699--4271Chr05:26817732..26817756 (25 bp)
CCTGAGTCTGTTTGGCTGGGACGTA
LOC_Os05g46420
Os.5372.1.S1_at--930--3891Chr05:26817747..26817771 (25 bp)
CTGGGACGTAGATCAAGCTGGGCTT
LOC_Os05g46420
Os.5372.1.S1_at--1084--5991Chr05:26818016..26818040 (25 bp)
GAGACCATGTACGAGAAGGCGCACA
LOC_Os05g46420
Os.5372.1.S1_at--797--5291Chr05:26818030..26818054 (25 bp)
GAAGGCGCACAAGCTCGGGCTCATG
LOC_Os05g46420
Os.5372.1.S1_at--173--2691Chr05:26818040..26818064 (25 bp)
AAGCTCGGGCTCATGGCGTACCGCT
LOC_Os05g46420
Os.5372.1.S1_at--1062--2851Chr05:26818107..26818131 (25 bp)
AAGTGCAACATCACAACAGCTTTGC
LOC_Os05g46420
Os.5372.1.S1_at--491--3271Chr05:26818120..26818144 (25 bp)
CAACAGCTTTGCACTCTCACAGAGT
LOC_Os05g46420
Os.5372.1.S1_at--739--8251Chr05:26818145..26818169 (25 bp)
GGCAGAACTTTCTAGAGCTTCCGCT
LOC_Os05g46420
Os.5372.1.S1_at--596--1351Chr05:26818158..26818182 (25 bp)
AGAGCTTCCGCTTGTCAGAAACTCA
LOC_Os05g46420
Os.5372.1.S1_at--484--3011Chr05:26818184..26818208 (25 bp)
AATGCAAAATCATCTCCCTCACGGG
LOC_Os05g46420
Target Sequence 
TCCGTATATCCGATGAGACATGCAAAAATTTTACATCCATGTATCTAAATACCCCCTGAGTCTGTTTGGCTGGGACGTAG
ATCAAGCTGGGCTTCCCGGAGGAGTACCTGACGGCGGTGAGCGGGCACTACGCGGCGGTGGCGCAGGGCGGCGCGCCGGC
GGTGATNAGGTGGCTGGCGTTCAGGACCAACCGGAGGGAGTACGGGCCGTTAGGCGGCGGCGCGGCGGAGGGCACGCCGT
TCGCGTTCCCGGTGGACGGCGGCGCCATCGTCGGGTTCTGGGGGAGGAGCGGCCGGCAGCTCGACGCCGTCGGCCTGCAC
GTCGCGCCGCTGCGGCCGGAGACCATGTACGAGAAGGCGCACAAGCTCGGGCTCATGGCGTACCGCTCGGTCCGGCAACG
CTTCGGGCCTCAGCAGCAGCAGCAGGTGCAAGTGCAACATCACAACAGCTTTGCACTCTCACAGAGTGGCAGAACTTTCT
AGAGCTTCCGCTTGTCAGAAACTCACAATGCAAAATCATCTCCCTCACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis