Browse Element(s) Details


OsAffx.27337.1.S1_at

Description tigr:9633.m04356
TID=OsAffx.27337.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4639011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed
LOC_Os05g46360Os.11146.1.S2_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46360Os.11146.1.S1_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46370OsAffx.15125.1.S1_at11/115+26796628..26797872Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g46380Os.53994.1.S1_at11/115+26801686..26804062F-box domain containing protein, expressed
LOC_Os05g46390OsAffx.27337.1.S1_at11/115+26805728..26807332F-box domain containing protein
LOC_Os05g46420Os.5372.1.S1_at11/115+26816857..26818265expressed protein
LOC_Os05g46430Os.7054.2.S1_x_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_a_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46440OsAffx.27339.1.S1_s_at10/115+26823935..26824332expressed protein
LOC_Os05g46450OsAffx.27340.1.S1_at10/115+26824875..26827544expressed protein
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27337.1.S1_at--74--4271Chr05:26806298..26806322 (25 bp)
CCTGAACCTCATCTTTCGATACAAG
LOC_Os05g46390
OsAffx.27337.1.S1_at--448--6331Chr05:26806232..26806256 (25 bp)
GATGCAGATTGCTGAGTACACCCCA
LOC_Os05g46390
OsAffx.27337.1.S1_at--444--6071Chr05:26806219..26806243 (25 bp)
GAGTACACCCCAGAAATAACAGAGC
LOC_Os05g46390
OsAffx.27337.1.S1_at--344--1611Chr05:26806197..26806221 (25 bp)
AGCTGTTCCTGGAGTTCACCGGACG
LOC_Os05g46390
OsAffx.27337.1.S1_at--940--3271Chr05:26806122..26806146 (25 bp)
CAAACCTCCGAAAGCTCGTGGTCGT
LOC_Os05g46390
OsAffx.27337.1.S1_at--438--7271Chr05:26806096..26806120 (25 bp)
GTGCCATCGTCGTGGGACGTCTCAT
LOC_Os05g46390
OsAffx.27337.1.S1_at--984--6131Chr05:26806054..26806078 (25 bp)
GAGGTGGCGCCATGCCTTGAGATCC
LOC_Os05g46390
OsAffx.27337.1.S1_at--226--6351Chr05:26805972..26805996 (25 bp)
GATGCGAGTCGCGACACAGGAAGCT
LOC_Os05g46390
OsAffx.27337.1.S1_at--80--8031Chr05:26805881..26805905 (25 bp)
GGAGGTATCATTAGCTCTGAAGTCT
LOC_Os05g46390
OsAffx.27337.1.S1_at--745--3851Chr05:26805865..26805889 (25 bp)
CTGAAGTCTGTGAGTCTGTGCAAAT
LOC_Os05g46390
OsAffx.27337.1.S1_at--430--6811Chr05:26805832..26805856 (25 bp)
GTTTACTGGGACTACGACATTGTTC
LOC_Os05g46390
Target Sequence 
CCTGAACCTCATCTTTCGATACAAGCATGATCATCACTCCACCTCCATGCCTTGGGGCATGAACCTGATGCAGATTGCTG
AGTACACCCCAGAAATAACAGAGCTGTTCCTGGAGTTCACCGGACGCGGGGCGGCGACGATGGATGCGCCGCCATCATCG
CCATTGCCGTCGCTGCCAAACCTCCGAAAGCTCGTGGTCGTCGTGCCATCGTCGTGGGACGTCTCATGGCCGCGCCTCCT
CTTGGAGGTGGCGCCATGCCTTGAGATCCTCCACGTCCATGTCGCCGCCTGCGAGGACGAGCCCCGCGGCGAGATCTCGT
GGCGGCGATGCGAGTCGCGACACAGGAAGCTGAAGGAGTTGGGGATGAGTGGCTTCGAGGGGACGGGAAGGCAGGTTTAC
TTTGTTAACTTTGTGATGGAGGTATCATTAGCTCTGAAGTCTGTGAGTCTGTGCAAATATGCAGGTGTTTACTGGGACTA
CGACATTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis