Browse Element(s) Details


Os.7054.2.S1_x_at

Description gb:AJ532534.1
DB_XREF= gi:27527611
TID=Os.7054.2
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.7054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069H24, full insert sequence
DEF=Oryza sativa snoR24e snoRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4643011/11Ribosomal L28e protein family protein, expressed
LOC_Os02g575401/11Ribosomal L28e protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46370OsAffx.15125.1.S1_at11/115+26796628..26797872Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g46380Os.53994.1.S1_at11/115+26801686..26804062F-box domain containing protein, expressed
LOC_Os05g46390OsAffx.27337.1.S1_at11/115+26805728..26807332F-box domain containing protein
LOC_Os05g46420Os.5372.1.S1_at11/115+26816857..26818265expressed protein
LOC_Os05g46430Os.7054.2.S1_x_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_a_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46440OsAffx.27339.1.S1_s_at10/115+26823935..26824332expressed protein
LOC_Os05g46450OsAffx.27340.1.S1_at10/115+26824875..26827544expressed protein
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7054.2.S1_x_at--85--5271Chr05:26819262..26819286 (25 bp)
GAAGGCCAAACCGATCAATTGGTTC
LOC_Os05g46430
Os.7054.2.S1_x_at--137--11Chr05:26819260..26819284 (25 bp)
AGGCCAAACCGATCAATTGGTTCTT
LOC_Os05g46430
Os.7054.2.S1_x_at--642--8431Chr05:26819259..26819283 (25 bp)
GGCCAAACCGATCAATTGGTTCTTC
LOC_Os05g46430
Os.7054.2.S1_x_at--1086--4372Chr05:26819258..26819282 (25 bp)
GCCAAACCGATCAATTGGTTCTTCG
LOC_Os05g46430
Os.7054.2.S1_x_at--371--3291Chr05:26819256..26819280 (25 bp)
CAAACCGATCAATTGGTTCTTCGAT
LOC_Os05g46430
Os.7054.2.S1_x_at--850--2371Chr05:26819255..26819279 (25 bp)
AAACCGATCAATTGGTTCTTCGATG
LOC_Os05g46430
Os.7054.2.S1_x_at--334--1791Chr05:26819253..26819277 (25 bp)
ACCGATCAATTGGTTCTTCGATGAA
LOC_Os05g46430
Os.7054.2.S1_x_at--1045--4231Chr05:26819252..26819276 (25 bp)
CCGATCAATTGGTTCTTCGATGAAA
LOC_Os05g46430
Os.7054.2.S1_x_at--95--4051Chr05:26819251..26819275 (25 bp)
CGATCAATTGGTTCTTCGATGAAAT
LOC_Os05g46430
Os.7054.2.S1_x_at--901--6452Chr05:26819250..26819274 (25 bp)
GATCAATTGGTTCTTCGATGAAATA
LOC_Os05g46430
Os.7054.2.S1_x_at--471--9731Chr05:26819248..26819272 (25 bp)
TCAATTGGTTCTTCGATGAAATATA
LOC_Os05g46430
Target Sequence 
GAAGGCCAAACCGATCAATTGGTTCTTCGATGAAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7054.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis