Browse Element(s) Details


Os.12551.1.S1_s_at

Description gb:U57641.1
DB_XREF= gi:2897839
TID=Os.12551.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12551 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for group 3 LEA (type I) protein
DEF=Oryza sativa LEA-like protein mRNA, embryo-specific clone Ose730, complete cds.
FL= gb:AK119713.1 gb:U57641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4648011/11Late embryogenesis abundant protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46430Os.7054.2.S1_x_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_a_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46440OsAffx.27339.1.S1_s_at10/115+26823935..26824332expressed protein
LOC_Os05g46450OsAffx.27340.1.S1_at10/115+26824875..26827544expressed protein
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12551.1.S1_s_at--500--1171Chr05:26844920..26844944 (25 bp)
AGTACACCAAGGACTCTGCCATCGC
LOC_Os05g46480
Os.12551.1.S1_s_at--85--4631Chr05:26845331..26845355 (25 bp)
GCGAGGGATCACTAGACGCCGTGAA
LOC_Os05g46480
Os.12551.1.S1_s_at--449--3711Chr05:26845342..26845366 (25 bp)
CTAGACGCCGTGAATGATTTCCCTT
LOC_Os05g46480
Os.12551.1.S1_s_at--1123--4291Chr05:26845363..26845387 (25 bp)
CCTTTGGGTCTATTTATGTATGTTT
LOC_Os05g46480
Os.12551.1.S1_s_at--36--8771Chr05:26845379..26845403 (25 bp)
TGTATGTTTTCACTTCAAATTCGGT
LOC_Os05g46480
Os.12551.1.S1_s_at--870--6811Chr05:26845418..26845442 (25 bp)
GTTTTTGTGTCGTTTTGAGTCTGTA
LOC_Os05g46480
Os.12551.1.S1_s_at--58--8891Chr05:26845433..26845457 (25 bp)
TGAGTCTGTATCGATGCTGTATGAA
LOC_Os05g46480
Os.12551.1.S1_s_at--1156--6271Chr05:26845512..26845536 (25 bp)
GATGTTCAGTTGTTTTCGTCAGAGT
LOC_Os05g46480
Os.12551.1.S1_s_at--674--9651Chr05:26845530..26845554 (25 bp)
TCAGAGTTTCTCGTCTGTGTTCTGT
LOC_Os05g46480
Os.12551.1.S1_s_at--54--7191Chr05:26845542..26845566 (25 bp)
GTCTGTGTTCTGTTTATTATGGCGT
LOC_Os05g46480
Os.12551.1.S1_s_at--414--1191Chr05:26845579..26845603 (25 bp)
AGTTTGGGCCTAAAGCCCGCATTTG
LOC_Os05g46480
Target Sequence 
AGTACACCAAGGACTCTGCCATCGCCGGCAAGGACAAGACCGGCAGCGTCCTCCAACAGGCGAGTGAGCAGGTGAAGAGC
ACGGTGGTCGGCGCCAAGGACGCGGTGATGAGCACGCTGGGGATGACCGAAGACGANGGCCGGCACCGACGACGGCGCCA
ACAAGGACACCNTCTGNCCACCNGNCNGCCNGCCCACCGGAGACGACGGCGAGGGATCACTAGACGCCGTGAATGATTTC
CCTTTGGGTCTATTTATGTATGTTTTCACTTCAAATTCGGTGCAAGTTTGAATTTGTTTTTGTGTCGTTTTGAGTCTGTA
TCGATGCTGTATGAAGTGGTGGTCGTCGCAGGGGAGGATTTCTGACGGGTGTGGGTGATGTGTACTGATGATGTTCAGTT
GTTTTCGTCAGAGTTTCTCGTCTGTGTTCTGTTTATTATGGCGTAACAATAATAAAAGTTTGGGCCTAAAGCCCGCATTT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12551.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis