Browse Element(s) Details


OsAffx.15128.1.S1_x_at

Description tigr:9633.m04370
TID=OsAffx.15128.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4650011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15128.1.S1_x_at--747--9411Chr05:26854480..26854504 (25 bp)
TCGTGTGGGACGACAGGCACCTGTC
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--201--5891Chr05:26854557..26854581 (25 bp)
GAGCGCAGCCGGTCGGCCGGGCACG
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--1027--4531Chr05:26854567..26854591 (25 bp)
GGTCGGCCGGGCACGGCGGGTACAG
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--974--4491Chr05:26854641..26854665 (25 bp)
GCCGTGTGCGGCTTCTGCAGGTTCT
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--602--4251Chr05:26854642..26854666 (25 bp)
CCGTGTGCGGCTTCTGCAGGTTCTT
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--831--3991Chr05:26854643..26854667 (25 bp)
CGTGTGCGGCTTCTGCAGGTTCTTC
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--505--7451Chr05:26854644..26854668 (25 bp)
GTGTGCGGCTTCTGCAGGTTCTTCG
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--802--8691Chr05:26854645..26854669 (25 bp)
TGTGCGGCTTCTGCAGGTTCTTCGG
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--193--9131Chr05:26854647..26854671 (25 bp)
TGCGGCTTCTGCAGGTTCTTCGGCG
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--804--8291Chr05:26854650..26854674 (25 bp)
GGCTTCTGCAGGTTCTTCGGCGGCA
LOC_Os05g46500
OsAffx.15128.1.S1_x_at--916--10591Chr05:26854653..26854677 (25 bp)
TTCTGCAGGTTCTTCGGCGGCAGCG
LOC_Os05g46500
Target Sequence 
TCGTGTGGGACGACAGGCACCTGTCCGGGGAGATCAAGCCGGCGGACGGCGGCGGCGGCGGCGCGGCGGCGAGGGTGGAG
CGCAGCCGGTCGGCCGGGCACGGCGGGTACAGGGCGGCGGGGCGCGTCCAGCCGGCGCTCGACCCGCCGTCGCCGCGCGT
CGCCGTGTGCGGCTTCTGCAGGTTCTTCGGCGGCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15128.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis