Browse Element(s) Details


OsAffx.4637.1.S1_at

Description tigr:9633.m04375
TID=OsAffx.4637.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g465409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os05g46590OsAffx.15129.1.S1_at11/115+26889094..26889699hypothetical protein
LOC_Os05g46600OsAffx.27341.1.S1_at11/115+26890405..26891228hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4637.1.S1_at--899--7591NONE
GGGCAGAGGCACTTGTCACATGGAC
NONE
OsAffx.4637.1.S1_at--1092--1311NONE
AGAGGCACTTGTCACATGGACTGGT
NONE
OsAffx.4637.1.S1_at--336--8251Chr05:26868177..26868197 (21 bp)
GGCACTTGTCACATGGACTGGTGTA
LOC_Os05g46540
OsAffx.4637.1.S1_at--38--3631Chr05:26868177..26868201 (25 bp)
CTTGTCACATGGACTGGTGTAGGCA
LOC_Os05g46540
OsAffx.4637.1.S1_at--896--9671Chr05:26868181..26868205 (25 bp)
TCACATGGACTGGTGTAGGCAACCA
LOC_Os05g46540
OsAffx.4637.1.S1_at--974--8511Chr05:26868186..26868210 (25 bp)
TGGACTGGTGTAGGCAACCAAACGA
LOC_Os05g46540
OsAffx.4637.1.S1_at--181--2651Chr05:26868201..26868225 (25 bp)
AACCAAACGACCCAAAGCTGCATGA
LOC_Os05g46540
OsAffx.4637.1.S1_at--541--2571Chr05:26868206..26868230 (25 bp)
AACGACCCAAAGCTGCATGAGGGAT
LOC_Os05g46540
OsAffx.4637.1.S1_at--691--2351Chr05:26868214..26868238 (25 bp)
AAAGCTGCATGAGGGATGCGAGCCA
LOC_Os05g46540
OsAffx.4637.1.S1_at--259--611Chr05:26868229..26868253 (25 bp)
ATGCGAGCCAGGCTTGATACAGGCA
LOC_Os05g46540
OsAffx.4637.1.S1_at--159--4091Chr05:26868232..26868256 (25 bp)
CGAGCCAGGCTTGATACAGGCAACC
LOC_Os05g46540
Target Sequence 
GGGCAGAGGCACTTGTCACATGGACTGGTGTAGGCAACCAAACGACCCAAAGCTGCATGAGGGATGCGAGCCAGGCTTGA
TACAGGCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis