Browse Element(s) Details


Os.54919.1.S1_at

Description gb:AK107100.1
DB_XREF= gi:32992309
TID=Os.54919.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-122-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-122-A03, full insert sequence.
FL= gb:AK107100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g465309/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os05g46590OsAffx.15129.1.S1_at11/115+26889094..26889699hypothetical protein
LOC_Os05g46600OsAffx.27341.1.S1_at11/115+26890405..26891228hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54919.1.S1_at--176--771NONE
ATGTCGCGGCGGGTAACACGAAGAT
NONE
Os.54919.1.S1_at--590--1851NONE
ACGAAGATGTGCAACACGCTGAGGA
NONE
Os.54919.1.S1_at--104--2951Chr05:26866140..26866164 (25 bp)
AAGGCGAGCCTCATCACCAAGATGT
LOC_Os05g46530
Os.54919.1.S1_at--346--9611Chr05:26866150..26866174 (25 bp)
TCATCACCAAGATGTCGGCGGCGAC
LOC_Os05g46530
Os.54919.1.S1_at--365--4371Chr05:26866246..26866270 (25 bp)
CCAAGAACAACGTCAACCGCGTCGT
LOC_Os05g46530
Os.54919.1.S1_at--318--4531Chr05:26866290..26866314 (25 bp)
GCCGCCAAGCTCAAGCTATAATTAG
LOC_Os05g46530
Os.54919.1.S1_at--382--151Chr05:26866310..26866334 (25 bp)
ATTAGCCAACTGATCATCAATCGAT
LOC_Os05g46530
Os.54919.1.S1_at--1086--3131Chr05:26866357..26866381 (25 bp)
AATTACACCTAGCTCATGCATGCGT
LOC_Os05g46530
Os.54919.1.S1_at--677--611Chr05:26866376..26866400 (25 bp)
ATGCGTCCGCGCGTTATGTGTGTAC
LOC_Os05g46530
Os.54919.1.S1_at--884--10111Chr05:26866390..26866414 (25 bp)
TATGTGTGTACGCACGCATGCATAT
LOC_Os05g46530
Os.54919.1.S1_at--593--3311Chr05:26866436..26866460 (25 bp)
CACAGAAGTGGTGGCGTATCTCGCA
LOC_Os05g46530
Target Sequence 
ATGTCGCGGCGGGTAACACGAAGATGTGCAACACGCTGAGGAAGCTGCCGGGGGTGAGCTCGCCGAAGGAGCTCCTGACG
GCGGCGGTGAAGCTGTCGATGAGGAAGGCGAAGGCGGCGAGGGCGAGGTTCGAGGCGGCGGCGAGGGCGGCGGAGAAGGG
GACGCCGATGGAGTCCATCCTGGACACCTGCAAGGAAGGGTACGACAGCACGGTGTCGGCGCTGCAGGAGGTGCAGCGCT
GCATCGACGCCAACGACAGCAAGGCGAGCCTCATCACCAAGATGTCGGCGGCGACCACCTTCACCGGCGACTGCGGCAAC
GCCTACGAGGAGCGGGAGCTGGAGCCCAGCCTCGCGCTCAAGGCCACCAAGAACAACGTCAACCGCGTCGTCACCGGCGC
CCTCGCCATCGCCGCCAAGCTCAAGCTATAATTAGCCAACTGATCATCAATCGATATGAATGATTGATCAACTATAAAAT
TACACCTAGCTCATGCATGCGTCCGCGCGTTATGTGTGTACGCACGCATGCATATGTGTAAGATCGATCAACAGATCACA
GAAGTGGTGGCGTATCTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis