Browse Element(s) Details


Os.11146.1.S2_at

Description gb:CB618650
DB_XREF= gi:29613637
DB_XREF=OSIIEa02L04.r
CLONE=OSIIEa02L04
TID=Os.11146.1
CNT=6
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.11146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157L23, full insert sequence
FL= gb:AK068633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4636011/11lysine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed
LOC_Os05g46360Os.11146.1.S2_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46360Os.11146.1.S1_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46370OsAffx.15125.1.S1_at11/115+26796628..26797872Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g46380Os.53994.1.S1_at11/115+26801686..26804062F-box domain containing protein, expressed
LOC_Os05g46390OsAffx.27337.1.S1_at11/115+26805728..26807332F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11146.1.S2_at--557--9031Chr05:26787490..26787514 (25 bp)
TGCACTGGATTCTCATCGCTTTGAA
LOC_Os05g46360
Os.11146.1.S2_at--754--9871Chr05:26787533..26787557 (25 bp)
TACTTTCCTCTGCTGGGTCGGTCGG
LOC_Os05g46360
Os.11146.1.S2_at--877--9391Chr05:26787550..26787574 (25 bp)
TCGGTCGGTCTTTTTTGGCATTTGG
LOC_Os05g46360
Os.11146.1.S2_at--39--10251Chr05:26787570..26787594 (25 bp)
TTTGGTTTGCTTTACGGAGCGCGTC
LOC_Os05g46360
Os.11146.1.S2_at--557--1931Chr05:26787583..26787607 (25 bp)
ACGGAGCGCGTCTTGTGTTGGTCTC
LOC_Os05g46360
Os.11146.1.S2_at--994--8571Chr05:26787616..26787640 (25 bp)
TGGTTGATGACGGTCACGTCGGCAC
LOC_Os05g46360
Os.11146.1.S2_at--562--1891Chr05:26787648..26787672 (25 bp)
ACGTTGTGGATGGAGATCCCTCGCT
LOC_Os05g46360
Os.11146.1.S2_at--36--3751Chr05:26787694..26787718 (25 bp)
CTCATTTTTCGCTTGGTTTGGCTTT
LOC_Os05g46360
Os.11146.1.S2_at--1107--10231Chr05:26787710..26787734 (25 bp)
TTTGGCTTTGCTTGCACCCGATCGA
LOC_Os05g46360
Os.11146.1.S2_at--576--6391Chr05:26787733..26787757 (25 bp)
GATCGATGTATCTGCACGACACGTC
LOC_Os05g46360
Os.11146.1.S2_at--761--5631Chr05:26787750..26787774 (25 bp)
GACACGTCGATACGATCAGCGGCGA
LOC_Os05g46360
Target Sequence 
TGCACTGGATTCTCATCGCTTTGAAGGTAGGCCGCGGGGGGCGTACTTTCCTCTGCTGGGTCGGTCGGTCTTTTTTGGCA
TTTGGTTTGCTTTACGGAGCGCGTCTTGTGTTGGTCTCGTCGTCTTTGGTTGATGACGGTCACGTCGGCACGTCCACGAC
GTTGTGGATGGAGATCCCTCGCTCCTGTGCTTTTCCTTTTCTTTCTCATTTTTCGCTTGGTTTGGCTTTGCTTGCACCCG
ATCGATCGATGTATCTGCACGACACGTCGATACGATCAGCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11146.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis