Browse Element(s) Details


OsAffx.4636.1.S1_at

Description tigr:9633.m04348
TID=OsAffx.4636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4631011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed
LOC_Os05g46360Os.11146.1.S2_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46360Os.11146.1.S1_at11/115+26785088..26787884lysine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4636.1.S1_at--965--4291Chr05:26761952..26761976 (25 bp)
CCTCAAATGTGGGTCACGCCGGAGA
LOC_Os05g46310
OsAffx.4636.1.S1_at--113--1831Chr05:26761967..26761991 (25 bp)
ACGCCGGAGAGTCCTTTCTTAGAGA
LOC_Os05g46310
OsAffx.4636.1.S1_at--988--6091Chr05:26761975..26761999 (25 bp)
GAGTCCTTTCTTAGAGATGCCCAGC
LOC_Os05g46310
OsAffx.4636.1.S1_at--1068--8631Chr05:26762036..26762060 (25 bp)
TGGGATGCCACATGGATCTGTGCCC
LOC_Os05g46310
OsAffx.4636.1.S1_at--266--491Chr05:26762051..26762075 (25 bp)
ATCTGTGCCCTTGTTGAGGAGGCTC
LOC_Os05g46310
OsAffx.4636.1.S1_at--758--6171Chr05:26762066..26762090 (25 bp)
GAGGAGGCTCCATCGCTTGAGAGAC
LOC_Os05g46310
OsAffx.4636.1.S1_at--472--10771Chr05:26762082..26762106 (25 bp)
TTGAGAGACTCCACGTCCACTTTTC
LOC_Os05g46310
OsAffx.4636.1.S1_at--322--7251Chr05:26762096..26762120 (25 bp)
GTCCACTTTTCCCAACGTTGTGAAG
LOC_Os05g46310
OsAffx.4636.1.S1_at--1042--691Chr05:26762127..26762151 (25 bp)
ATGAGATGGCCGTTCGTCGGAAGTT
LOC_Os05g46310
OsAffx.4636.1.S1_at--291--10851Chr05:26762207..26762231 (25 bp)
TTGGTGGTCATTGGTTTTCAGATCA
LOC_Os05g46310
OsAffx.4636.1.S1_at--381--2911Chr05:26762243..26762267 (25 bp)
AAGGTTCAGCTTGTGAGGCATATCA
LOC_Os05g46310
Target Sequence 
CCTCAAATGTGGGTCACGCCGGAGAGTCCTTTCTTAGAGATGCCCAGCCTGAGGAAGCTGCTGGTCGTGGACATGCCGCC
GCGCTGGGATGCCACATGGATCTGTGCCCTTGTTGAGGAGGCTCCATCGCTTGAGAGACTCCACGTCCACTTTTCCCAAC
GTTGTGAAGACGATGATGAGATGGCCGTTCGTCGGAAGTTGGAGATAGTGTGGGAGCAGGAGCCCTCAAGAGCACTGCAT
TCTCATCTGGAGGAGTTGGTGGTCATTGGTTTTCAGATCAAGAAAGAAAGAAAGGTTCAGCTTGTGAGGCATATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis