Browse Element(s) Details


Os.8729.1.S1_at

Description gb:AK100416.1
DB_XREF= gi:32985625
TID=Os.8729.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087M19, full insert sequence.
FL= gb:AK100416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4626011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46200Os.14570.1.S1_at11/115+26711104..26718236Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g46210Os.54365.1.S1_at11/115+26718390..26722006esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g46220Os.49242.1.S1_at11/115+26722589..26725794Mitochondrial carrier protein, expressed
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0016337biological_processcell-cell adhesion
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8729.1.S1_at--856--1431Chr05:26744771..26744795 (25 bp)
AGAACTTCAACTGCGAGGACTTGCT
LOC_Os05g46260
Os.8729.1.S1_at--1074--2691Chr05:26744820..26744844 (25 bp)
AAGCTCTTCGAGGACTGTGGAGTAT
LOC_Os05g46260
Os.8729.1.S1_at--522--8551Chr05:26744837..26744861 (25 bp)
TGGAGTATGTTCACCCTGCTTGGGC
LOC_Os05g46260
Os.8729.1.S1_at--894--10811Chr05:26744856..26744880 (25 bp)
TTGGGCTATCGACACTTCCAAGCTT
LOC_Os05g46260
Os.8729.1.S1_at--418--4891Chr05:26744877..26744901 (25 bp)
GCTTTCTTCAGTTGCTATTAGCCGA
LOC_Os05g46260
Os.8729.1.S1_at--571--10211Chr05:26744892..26744916 (25 bp)
TATTAGCCGAGACACGCAGAAGCAC
LOC_Os05g46260
Os.8729.1.S1_at--395--8391Chr05:26744940..26744964 (25 bp)
GGCGAAGTTCGCCTCCATATATGGC
LOC_Os05g46260
Os.8729.1.S1_at--971--7511Chr05:26745163..26745187 (25 bp)
GTGGATGATTCTCTGTAGCTTTTGA
LOC_Os05g46260
Os.8729.1.S1_at--1025--7351Chr05:26745232..26745256 (25 bp)
GTGAAGCGTCAAAACTGCATGGATT
LOC_Os05g46260
Os.8729.1.S1_at--866--7931Chr05:26745252..26745276 (25 bp)
GGATTCAATCCTTCCTGTTTTATTA
LOC_Os05g46260
Os.8729.1.S1_at--326--4271Chr05:26745265..26745289 (25 bp)
CCTGTTTTATTAGCACTCTGGGAAT
LOC_Os05g46260
Target Sequence 
AGAACTTCAACTGCGAGGACTTGCTCATGAATTTTCTGTATGCAAATGCAAGCTCTTCGAGGACTGTGGAGTATGTTCAC
CCTGCTTGGGCTATCGACACTTCCAAGCTTTCTTCAGTTGCTATTAGCCGAGACACGCAGAAGCACTATGACATCAGAAC
GAAATGCTTGGCGAAGTTCGCCTCCATATATGGCCCTCTCCCCCAGAAATGGCTATTTGGCATGAGAGAGGATGGCTGGG
ACAAATAGTCTCGACAAGGCGGAATAGACAGCCAACACATGCAAANTGTTGAATATTTTTGTTCCTACAACTTCCTTTTT
GGTAGAAGTGACTTGTTTAGTGATGTAATTTGGGTAGAAGCCAAGAACCTTGTAAATCATGATCTGTTCAAAGTGGATGA
TTCTCTGTAGCTTTTGATGAACATGTTAAAATAGCCAAATTCAATGCAGTTTTCTTTGTGAGTGAAGCGTCAAAACTGCA
TGGATTCAATCCTTCCTGTTTTATTAGCACTCTGGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis