Browse Element(s) Details


Os.49242.1.S1_at

Description gb:AK066441.1
DB_XREF= gi:32976459
TID=Os.49242.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067P17, full insert sequence.
FL= gb:AK066441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4622011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46180OsAffx.15123.2.S1_at1/115+26697243..26698535hypothetical protein
LOC_Os05g46190NANA5+26708783..26710129expressed protein
LOC_Os05g46200Os.14570.1.S1_at11/115+26711104..26718236Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g46210Os.54365.1.S1_at11/115+26718390..26722006esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g46220Os.49242.1.S1_at11/115+26722589..26725794Mitochondrial carrier protein, expressed
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0015865biological_processpurine nucleotide transport
GO:0005739cellular_componentmitochondrion
GO:0005740cellular_componentmitochondrial envelope
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005471molecular_functionATP:ADP antiporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49242.1.S1_at--32--7671Chr05:26725245..26725269 (25 bp)
GGGATCAAGTCGTTCTACCGCGGAG
LOC_Os05g46220
Os.49242.1.S1_at--622--9951Chr05:26725260..26725284 (25 bp)
TACCGCGGAGCACTTTCTAACATGT
LOC_Os05g46220
Os.49242.1.S1_at--1085--9811Chr05:26725277..26725301 (25 bp)
TAACATGTTTAGGAGCACTGGCGCT
LOC_Os05g46220
Os.49242.1.S1_at--405--6131Chr05:26725377..26725401 (25 bp)
GAGGGTTTGGTTCAGGTTCTCCACA
LOC_Os05g46220
Os.49242.1.S1_at--267--1351Chr05:26725473..26725497 (25 bp)
AGAGTTGTAGTACTGGATTCCTCCA
LOC_Os05g46220
Os.49242.1.S1_at--493--1011Chr05:26725497..26725521 (25 bp)
AGGTCACTAACCCAGCTCGATGTAA
LOC_Os05g46220
Os.49242.1.S1_at--717--9811Chr05:26725519..26725543 (25 bp)
TAACTGGCGTTCTTCATGGTCTGAA
LOC_Os05g46220
Os.49242.1.S1_at--846--2931Chr05:26725575..26725599 (25 bp)
AAGGCAGAGCTTTGCTTCTTGTGTT
LOC_Os05g46220
Os.49242.1.S1_at--228--10811Chr05:26725611..26725635 (25 bp)
TTGTATGCCAGCCTACACGTGTGAC
LOC_Os05g46220
Os.49242.1.S1_at--1076--191Chr05:26725680..26725704 (25 bp)
ATTTCGGTCAATTTCTGCGTGGCAG
LOC_Os05g46220
Os.49242.1.S1_at--63--5331Chr05:26725764..26725788 (25 bp)
GATTACTTTACTCAAGCCTCGGTTG
LOC_Os05g46220
Target Sequence 
GGGATCAAGTCGTTCTACCGCGGAGCACTTTCTAACATGTTTAGGAGCACTGGCGCTGCCGCCATACTTGTTTTGTATGA
TGAAGTTAAGAAGTTTATGGACAGGGGTAGGTTATGACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCACAGAT
TTTTGGATTCAGTATGGAGATTAGACCGCCAAAGGTACAGGGAGCAGCAAGCTCGAGCATTTTGTAATAGAGTTGTAGTA
CTGGATTCCTCCAGGTCACTAACCCAGCTCGATGTAACTGGCGTTCTTCATGGTCTGAAGATGGTAGCTCTTGTTTGTTC
ATTTGGTTTGAAGGCAGAGCTTTGCTTCTTGTGTTATTGTCATTGGTTGTATGCCAGCCTACACGTGTGACTCAAAAGTT
CACTCTTCAGAGTTCAAACGGTAGTTTCACGGCGAATTTCGGTCAATTTCTGCGTGGCAGTCGAACAAAATTGTCTTGTC
AAGAAATCGCTTATGAGCACGCAGACAAGGCACTTGCGAGATTACTTTACTCAAGCCTCGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis