Browse Element(s) Details


OsAffx.15124.1.S1_at

Description tigr:9633.m04341
TID=OsAffx.15124.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g462509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46200Os.14570.1.S1_at11/115+26711104..26718236Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g46210Os.54365.1.S1_at11/115+26718390..26722006esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g46220Os.49242.1.S1_at11/115+26722589..26725794Mitochondrial carrier protein, expressed
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15124.1.S1_at--956--6931NONE
GTACGACGGGCAGATATGGGTTAAA
NONE
OsAffx.15124.1.S1_at--1102--2611Chr05:26739352..26739376 (25 bp)
AACCCCAGAAGTTTTGGCTCGTGAT
LOC_Os05g46250
OsAffx.15124.1.S1_at--197--4791Chr05:26739368..26739392 (25 bp)
GCTCGTGATCGGCTTCTAGGTTCAT
LOC_Os05g46250
OsAffx.15124.1.S1_at--864--7891NONE
GGTTCATTTTCTGTCAAGCCTGTGC
NONE
OsAffx.15124.1.S1_at--403--7091Chr05:26739771..26739795 (25 bp)
GTCAAGCCTGTGCTGAACAGAGTGA
LOC_Os05g46250
OsAffx.15124.1.S1_at--1074--2471Chr05:26739786..26739810 (25 bp)
AACAGAGTGAAATTTACCTTGGTGG
LOC_Os05g46250
OsAffx.15124.1.S1_at--40--7471Chr05:26739819..26739843 (25 bp)
GTGTCCCTGATTCTTTGCATTCTTC
LOC_Os05g46250
OsAffx.15124.1.S1_at--572--1951Chr05:26739885..26739909 (25 bp)
ACTGTCGGGCGTGCTATCCCTGGAG
LOC_Os05g46250
OsAffx.15124.1.S1_at--400--551Chr05:26739900..26739924 (25 bp)
ATCCCTGGAGTGTACGATGATACTT
LOC_Os05g46250
OsAffx.15124.1.S1_at--1055--6471Chr05:26739918..26739942 (25 bp)
GATACTTCTGCAAGGTCATTCGAGC
LOC_Os05g46250
OsAffx.15124.1.S1_at--841--7131Chr05:26739932..26739956 (25 bp)
GTCATTCGAGCCTGATGCGTTCTGT
LOC_Os05g46250
Target Sequence 
GTACGACGGGCAGATATGGGTTAAAACCCCAGAAGTTTTGGCTCGTGATCGGCTTCTAGGTTCATTTTCTGTCAAGCCTG
TGCTGAACAGAGTGAAATTTACCTTGGTGGGGCTGGCAGTGTCCCTGATTCTTTGCATTCTTCTCTACGCCAACACCGAA
AACCCAAAGGATCCTTTTGAAAACACTGTCGGGCGTGCTATCCCTGGAGTGTACGATGATACTTCTGCAAGGTCATTCGA
GCCTGATGCGTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis