Browse Element(s) Details


Os.22773.1.S1_at

Description gb:AK070127.1
DB_XREF= gi:32980151
TID=Os.22773.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045O03, full insert sequence.
FL= gb:AK070127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4629011/11Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006954biological_processinflammatory response
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009408biological_processresponse to heat
GO:0051131biological_processchaperone-mediated protein complex assembly
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22773.1.S1_at--2--7971Chr05:26752960..26752984 (25 bp)
GGATCATCGACCCTGTGAAAGTCAT
LOC_Os05g46290
Os.22773.1.S1_at--739--5571Chr05:26752944..26752968 (25 bp)
GAAAGTCATCCGAACAGCGCTACAA
LOC_Os05g46290
Os.22773.1.S1_at--925--4571Chr05:26752840..26752952 (25 bp)
GCGCTACAAGATGCATCAAGTGTTT
LOC_Os05g46290
Os.22773.1.S1_at--853--2831Chr05:26752823..26752846 (24 bp)
AAGTGTTTCTTTGCTGATGACAACG
LOC_Os05g46290
Os.22773.1.S1_at--726--5651Chr05:26752799..26752823 (25 bp)
GACAGAGGCAGCTGTTGCTGAGCCC
LOC_Os05g46290
Os.22773.1.S1_at--1105--6531Chr05:26752701..26752725 (25 bp)
GATTTATGATATGTCTTCTCCTGAT
LOC_Os05g46290
Os.22773.1.S1_at--171--10591Chr05:26752686..26752710 (25 bp)
TTCTCCTGATGTAAGGCAGTGCCCC
LOC_Os05g46290
Os.22773.1.S1_at--466--2931Chr05:26752674..26752698 (25 bp)
AAGGCAGTGCCCCTCAAATGAAAGG
LOC_Os05g46290
Os.22773.1.S1_at--528--191Chr05:26752580..26752604 (25 bp)
ATTTCTACAGAATTTCACGGCCCGG
LOC_Os05g46290
Os.22773.1.S1_at--261--8311Chr05:26752562..26752586 (25 bp)
GGCCCGGGAGAAAGACGTTACAGAT
LOC_Os05g46290
Os.22773.1.S1_at--1152--8191Chr05:26752511..26752535 (25 bp)
GGAATCCGTCTGATGTAAACTGAAC
LOC_Os05g46290
Target Sequence 
GGATCATCGACCCTGTGAAAGTCATCCGAACAGCGCTACAAGATGCATCAAGTGTTTCTTTGCTGATGACAACGACAGAG
GCAGCTGTTGCTGAGCCCCCAGCAGCAAAGGCCAGAATGGCNAGTCGGATGCCGCAGATGAGCGGGATGGATTTTTGAGA
GCAAGTAACATGATTTATGATATGTCTTCTCCTGATGTAAGGCAGTGCCCCTCAAATGAAAGGGGTGATTTTTTGAAAGC
TATATGACGTGATTTTGTCTTTTCGTGGTGAAAGGCNGTAGTAGTACTTAATATTTCTACAGAATTTCACGGCCCGGGAG
AAAGACGTTACAGATATAATTTATTTTAAACTTGGGAATNNGGAATCCGTCTGATGTAAACTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis