Browse Element(s) Details


Os.17889.1.S1_at

Description gb:AK072284.1
DB_XREF= gi:32982307
TID=Os.17889.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018F03, full insert sequence.
FL= gb:AK060489.1 gb:AK072284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4634011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed
LOC_Os05g46360Os.11146.1.S2_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46360Os.11146.1.S1_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46370OsAffx.15125.1.S1_at11/115+26796628..26797872Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17889.1.S1_at--245--2211Chr05:26775534..26775558 (25 bp)
ACAAGCGCACTACGGTAGGACCCGG
LOC_Os05g46340
Os.17889.1.S1_at--427--5771Chr05:26775450..26775474 (25 bp)
GACGATGACCAAGTCGAGCTCGGAG
LOC_Os05g46340
Os.17889.1.S1_at--12--7531Chr05:26775383..26775407 (25 bp)
GTGGACGCCAGAGCCGACGACTTCA
LOC_Os05g46340
Os.17889.1.S1_at--254--131Chr05:26775351..26775375 (25 bp)
ATTCAGGCAGCAACTGCAGCTTCAG
LOC_Os05g46340
Os.17889.1.S1_at--726--2551Chr05:26775340..26775364 (25 bp)
AACTGCAGCTTCAGAGGCTCAACTC
LOC_Os05g46340
Os.17889.1.S1_at--499--5051Chr05:26775280..26775304 (25 bp)
GCAGCAAGCAGTAGCTAGCCACACT
LOC_Os05g46340
Os.17889.1.S1_at--26--1191Chr05:26775271..26775295 (25 bp)
AGTAGCTAGCCACACTCGCCAAGAA
LOC_Os05g46340
Os.17889.1.S1_at--901--2451Chr05:26775245..26775269 (25 bp)
AACAAGAGCCTTGCAATTTCACAGC
LOC_Os05g46340
Os.17889.1.S1_at--970--5191Chr05:26775233..26775257 (25 bp)
GCAATTTCACAGCAAGCTCACTAAG
LOC_Os05g46340
Os.17889.1.S1_at--731--4831Chr05:26775218..26775242 (25 bp)
GCTCACTAAGCTCCCTGTTAATTAT
LOC_Os05g46340
Os.17889.1.S1_at--322--4791Chr05:26775209..26775233 (25 bp)
GCTCCCTGTTAATTATACTACTTAG
LOC_Os05g46340
Target Sequence 
ACAAGCGCACTACGGTAGGACCCGGTCGGAGCCGGCGCGGGAGCAGGACAAGAAGGCGAAGAAGCAGGCGGCGTCGGAGG
CGAAGACGATGACCAAGTCGAGCTCGGAGGCGAGGAAGGACACGGCGGCGGAGGACGCCGACGACGGCGGCGTGGACGCC
AGAGCCGACGACTTCATCAACAAATTCAGGCAGCAACTGCAGCTTCAGAGGCTCAACTCGCTGCTCAACTACAAGGAGAT
GCTCAACCGCGGCAGCAGCAAGCAGTAGCTAGCCACACTCGCCAAGAACAACAAGAGCCTTGCAATTTCACAGCAAGCTC
ACTAAGCTCCCTGTTAATTATACTACTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis