Browse Element(s) Details


Os.11146.1.S1_at

Description gb:AK068633.1
DB_XREF= gi:32978650
TID=Os.11146.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157L23, full insert sequence.
FL= gb:AK068633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4636011/11lysine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed
LOC_Os05g46360Os.11146.1.S2_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46360Os.11146.1.S1_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46370OsAffx.15125.1.S1_at11/115+26796628..26797872Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g46380Os.53994.1.S1_at11/115+26801686..26804062F-box domain containing protein, expressed
LOC_Os05g46390OsAffx.27337.1.S1_at11/115+26805728..26807332F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11146.1.S1_at--313--10771Chr05:26785533..26785557 (25 bp)
TTGATCGCGCGTACGGTTCTCGACG
LOC_Os05g46360
Os.11146.1.S1_at--944--7711Chr05:26785743..26785767 (25 bp)
GGGTGATTCCTAGAGCTCTCATGGC
LOC_Os05g46360
Os.11146.1.S1_at--574--1631Chr05:26786370..26786394 (25 bp)
AGCGGAGATGGCTCGGCGATCCAAA
LOC_Os05g46360
Os.11146.1.S1_at--529--4631Chr05:26786385..26786409 (25 bp)
GCGATCCAAAGCGTTCATTGCTCTT
LOC_Os05g46360
Os.11146.1.S1_at--902--6651Chr05:26786742..26786766 (25 bp)
GTTGACGGTTACTACGATCCACTGC
LOC_Os05g46360
Os.11146.1.S1_at--3--1971Chr05:26786762..26786786 (25 bp)
ACTGCTCGCGTTGTTCGACAAAGGC
LOC_Os05g46360
Os.11146.1.S1_at--1100--891Chr05:26786788..26786812 (25 bp)
AGGCGGAGGGCTTCATCAACTCTGA
LOC_Os05g46360
Os.11146.1.S1_at--743--2251Chr05:26786821..26786845 (25 bp)
AAATATTTGTATCTGCACCAACTGC
LOC_Os05g46360
Os.11146.1.S1_at--1080--3071Chr05:26786953..26786977 (25 bp)
AATACACTCGGTTGCACCAGGAGGT
LOC_Os05g46360
Os.11146.1.S1_at--391--10111Chr05:26787015..26787039 (25 bp)
TATGGAAGAACACCGGGCGCTGATC
LOC_Os05g46360
Os.11146.1.S1_at--801--7031Chr05:26787072..26787096 (25 bp)
GTACAAGCTCTACTAATGCCTTTGC
LOC_Os05g46360
Target Sequence 
TTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGATATC
AGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGT
TCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGAC
AAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTT
CATCAACTCTGATTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGNAGCAATACACT
CGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGAACACCGGGCGCTGATCA
ATCCTAGCCCCCCTCACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis