Browse Element(s) Details


Os.51305.1.S1_at

Description gb:AK062486.1
DB_XREF= gi:32972504
TID=Os.51305.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-G10, full insert sequence.
FL= gb:AK062486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4628011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51305.1.S1_at--207--9851Chr05:26751265..26751289 (25 bp)
TACGCGGACCGGCAATTCAACAGGT
LOC_Os05g46280
Os.51305.1.S1_at--108--1191Chr05:26751910..26751934 (25 bp)
AGTACTGGGAAGATCATCCGGGCGA
LOC_Os05g46280
Os.51305.1.S1_at--1156--4811Chr05:26751944..26751968 (25 bp)
GCTCATGCCGCCCAAATTCTACTGG
LOC_Os05g46280
Os.51305.1.S1_at--687--1931Chr05:26751988..26752012 (25 bp)
ACGGAGAAGTTCCACGCTTTATGCA
LOC_Os05g46280
Os.51305.1.S1_at--346--9211Chr05:26751998..26752022 (25 bp)
TCCACGCTTTATGCAGACACCAGAA
LOC_Os05g46280
Os.51305.1.S1_at--142--5651Chr05:26752013..26752037 (25 bp)
GACACCAGAAGAGGCGAAACCGGCA
LOC_Os05g46280
Os.51305.1.S1_at--602--8391Chr05:26752025..26752049 (25 bp)
GGCGAAACCGGCATAAAATCTTCAA
LOC_Os05g46280
Os.51305.1.S1_at--1113--431Chr05:26752060..26752084 (25 bp)
ATCTTTTAAATGTTGCGTGTCTGTA
LOC_Os05g46280
Os.51305.1.S1_at--185--6511Chr05:26752092..26752116 (25 bp)
GATATGTAGTGTTTGTTGCGTGAAT
LOC_Os05g46280
Os.51305.1.S1_at--584--3531Chr05:26752131..26752155 (25 bp)
CATCGATCTCAAGGCAAGTAGAGTT
LOC_Os05g46280
Os.51305.1.S1_at--1130--9771Chr05:26752189..26752213 (25 bp)
TATTTCCCCTTATCCCCTTATAATG
LOC_Os05g46280
Target Sequence 
TACGCGGACCGGCAATTCAACAGGTGGGAGAAGACGGTGCTCTGGGACATGGTGGAGCCGTACCGCCCGCCGCGCTCGTT
CGCGCCACTCATCGGCACCTACGTCGCCGCCTTCTACACCGGCGTCGTCGCCTCCGCCATCACCGAGCAGCTTTACAAGG
AGAAGTACTGGGAAGATCATCCGGGCGAGGCCGTGCCGCTCATGCCGCCCAAATTCTACTGGGGGCCATGGAGGGTGATG
AACGGAGAAGTTCCACGCTTTATGCAGACACCAGAAGAGGCGAAACCGGCATAAAATCTTCAATGATCACTGAATCTTTT
AAATGTTGCGTGTCTGTAAGGACACGATATGTAGTGTTTGTTGCGTGAATAAACAGTTTGCCCCCATCGATCTCAAGGCA
AGTAGAGTTAGATACGATCTATATTATACGGTATAAACGGTTTATTTCCCCTTATCCCCTTATAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis