Browse Element(s) Details


Os.15241.1.S1_at

Description gb:AK105671.1
DB_XREF= gi:32990880
TID=Os.15241.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A05, full insert sequence.
FL= gb:AK105671.1 gb:AK071120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4623011/11Nucleosome assembly protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46190NANA5+26708783..26710129expressed protein
LOC_Os05g46200Os.14570.1.S1_at11/115+26711104..26718236Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g46210Os.54365.1.S1_at11/115+26718390..26722006esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g46220Os.49242.1.S1_at11/115+26722589..26725794Mitochondrial carrier protein, expressed
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15241.1.S1_at--565--5611Chr05:26726472..26726496 (25 bp)
GACAAGATCATTCCACATGCTGTTT
LOC_Os05g46230
Os.15241.1.S1_at--722--10531Chr05:26726449..26726473 (25 bp)
TTCATGGTTTACTGGAGAGGCTGCT
LOC_Os05g46230
Os.15241.1.S1_at--395--1171Chr05:26726161..26726185 (25 bp)
AGTAAGATGCTTCCTACCTGAGCGT
LOC_Os05g46230
Os.15241.1.S1_at--1052--9931Chr05:26726147..26726171 (25 bp)
TACCTGAGCGTTTCCAAAGTCCGGT
LOC_Os05g46230
Os.15241.1.S1_at--535--3291Chr05:26726133..26726157 (25 bp)
CAAAGTCCGGTCCTGGAGTGAAGAA
LOC_Os05g46230
Os.15241.1.S1_at--375--5271Chr05:26726108..26726132 (25 bp)
GAATGTTTGGTTCGGCTTGATGCAA
LOC_Os05g46230
Os.15241.1.S1_at--32--671Chr05:26726089..26726113 (25 bp)
ATGCAATGTCTCGTCCATTTGGTTT
LOC_Os05g46230
Os.15241.1.S1_at--532--7851Chr05:26725976..26726000 (25 bp)
GGTAGCTTTTTCCATTGTTGTATTG
LOC_Os05g46230
Os.15241.1.S1_at--394--6851Chr05:26725957..26725981 (25 bp)
GTATTGGGTCGACATATCTTGTGCG
LOC_Os05g46230
Os.15241.1.S1_at--117--251Chr05:26725911..26725935 (25 bp)
ATATCGCCGGTTTGGTATTATCATA
LOC_Os05g46230
Os.15241.1.S1_at--100--8691Chr05:26725829..26725853 (25 bp)
TGTGCGACCAAGTTGCATCTTTGAT
LOC_Os05g46230
Target Sequence 
GACAAGATCATTCCACATGCTGTTTCATGGTTTACTGGAGAGGCTGCTCAAGATGAGGACTTCGAAGGCATTATGGATGA
TGAAGATGATGACGATGAAGATGACGACGATGATGAAGATGAGGATGACGAGGGTGATGATGAAGACGACGAGGATGAAA
AGAAGGGCGGACGAGTTCCTGCAGGGGAAGGGCAGCAGGGAGAGCGACCTGCAGAATGCAAGCAACAGTAAGATGCTTCC
TACCTGAGCGTTTCCAAAGTCCGGTCCTGGAGTGAAGAAGAATGTTTGGTTCGGCTTGATGCAATGTCTCGTCCATTTGG
TTTGGAGAGCCAGTTGGGGAAGTGTTGGGATTGAGTTGGTTTAGTGGAACTGGCGGGGGATATTTTTTTCGGGACATGGT
ATTATATGTTTGGTAGCTTTTTCCATTGTTGTATTGGGTCGACATATCTTGTGCGAAGCTTATGGTTGAGTGATGAATAT
CGCCGGTTTGGTATTATCATATTGCCAATACCACTGGCATAGTGCTGAGAAATTTTGATCTAGGAGAGGNAATGNTNNTG
TGCGACCAAGTTGCATCTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis