Browse Element(s) Details


OsAffx.4639.1.S1_at

Description tigr:9633.m04382
TID=OsAffx.4639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4661011/11Myb-related protein Hv33, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os05g46590OsAffx.15129.1.S1_at11/115+26889094..26889699hypothetical protein
LOC_Os05g46600OsAffx.27341.1.S1_at11/115+26890405..26891228hypothetical protein
LOC_Os05g46610OsAffx.4639.1.S1_at11/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46610Os.57514.1.S1_x_at1/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46620OsAffx.4640.1.S1_x_at11/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46620Os.7168.1.S1_at10/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46630Os.8550.1.S1_x_at11/115+26912470..26915901expressed protein
LOC_Os05g46640OsAffx.27342.1.S1_at11/115+26916366..26917351hypothetical protein
LOC_Os05g46650NANA5+26918379..26918819hypothetical protein
LOC_Os05g46660NANA5+26922489..26924411transposon protein, putative, Mutator sub-class
LOC_Os05g46670NANA5+26927289..26927726transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4639.1.S1_at--141--4051Chr05:26905008..26905032 (25 bp)
CGACGTCCTCGGAGTCGGCGGTCAC
LOC_Os05g46610
OsAffx.4639.1.S1_at--537--7991Chr05:26905039..26905063 (25 bp)
GGATGAGGATCACAAGCCCCACGGC
LOC_Os05g46610
OsAffx.4639.1.S1_at--256--5451Chr05:26905102..26905126 (25 bp)
GAACGCCAAGCAGTCGGTGTTCGAC
LOC_Os05g46610
OsAffx.4639.1.S1_at--762--6711Chr05:26905222..26905246 (25 bp)
GTTCGTCGCCGACTACAGCAGCGTG
LOC_Os05g46610
OsAffx.4639.1.S1_at--512--1491Chr05:26905295..26905319 (25 bp)
AGCAACTGGACCTGCGCCGAGGTGA
LOC_Os05g46610
OsAffx.4639.1.S1_at--788--2971Chr05:26905322..26905346 (25 bp)
AATGTGCTCGACAGCGAGGTGCTCA
LOC_Os05g46610
OsAffx.4639.1.S1_at--816--4791Chr05:26905327..26905351 (25 bp)
GCTCGACAGCGAGGTGCTCAACTGG
LOC_Os05g46610
OsAffx.4639.1.S1_at--728--2931Chr05:26905382..26905406 (25 bp)
AAGGCAGAGCCCTTCGCCGACATGG
LOC_Os05g46610
OsAffx.4639.1.S1_at--503--5811Chr05:26905451..26905475 (25 bp)
GACGCCACGCTGGAGCACAAGTTCT
LOC_Os05g46610
OsAffx.4639.1.S1_at--1159--8531Chr05:26905461..26905485 (25 bp)
TGGAGCACAAGTTCTCGCTACCATG
LOC_Os05g46610
OsAffx.4639.1.S1_at--172--2231Chr05:26905467..26905491 (25 bp)
ACAAGTTCTCGCTACCATGCCATGA
LOC_Os05g46610
Target Sequence 
CGACGTCCTCGGAGTCGGCGGTCACCCAGGTGGATGAGGATCACAAGCCCCACGGCGCCGCCGCCGCCGCCGCCGCCGCC
GACGGCCTCGCCGCGAACGCCAAGCAGTCGGTGTTCGACCCGTTCCCGGTGACCGACTTCGGCGCCGGCTTCGACCTCGG
CGCGGCGAACATGGCGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCAGCGTGC
TCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGACCTGCGCCGAGGTGAGCAATGTG
CTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGA
GCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGGAGCACAAGTTCTCGCTACCATGCC
ATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis