Browse Element(s) Details


OsAffx.27342.1.S1_at

Description tigr:9633.m04384
TID=OsAffx.27342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4664011/11hypothetical protein
LOC_Os01g358604/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46610OsAffx.4639.1.S1_at11/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46610Os.57514.1.S1_x_at1/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46620OsAffx.4640.1.S1_x_at11/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46620Os.7168.1.S1_at10/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46630Os.8550.1.S1_x_at11/115+26912470..26915901expressed protein
LOC_Os05g46640OsAffx.27342.1.S1_at11/115+26916366..26917351hypothetical protein
LOC_Os05g46650NANA5+26918379..26918819hypothetical protein
LOC_Os05g46660NANA5+26922489..26924411transposon protein, putative, Mutator sub-class
LOC_Os05g46670NANA5+26927289..26927726transposon protein, putative, unclassified
LOC_Os05g46680OsAffx.15130.1.S1_at11/115+26935282..26935895hypothetical protein
LOC_Os05g46690OsAffx.4641.1.S1_at11/115+26941703..26943787hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27342.1.S1_at--755--9831Chr05:26916763..26916787 (25 bp)
TAAATCTCACATCCTAGTTTGCAAT
LOC_Os05g46640
OsAffx.27342.1.S1_at--309--8951Chr05:26916843..26916867 (25 bp)
TGACTGTTGCGTATCATAGCCCAAG
LOC_Os05g46640
OsAffx.27342.1.S1_at--309--312Chr05:26916858..26916882 (25 bp)
ATAGCCCAAGTAGTGAGCCTTCTGT
LOC_Os05g46640
OsAffx.27342.1.S1_at--603--1691Chr05:26916873..26916897 (25 bp)
AGCCTTCTGTGATTCCCGATTGGGA
LOC_Os05g46640
OsAffx.27342.1.S1_at--827--9291Chr05:26916886..26916910 (25 bp)
TCCCGATTGGGATTGTTCTAAGCAA
LOC_Os05g46640
OsAffx.27342.1.S1_at--540--1491Chr05:26916906..26916930 (25 bp)
AGCAAAGCACTGTGAACCCTGCTCA
LOC_Os05g46640
OsAffx.27342.1.S1_at--204--4192Chr05:26916943..26916967 (25 bp)
CCCTTCTATTGCATGTCCAAGCTTA
LOC_Os05g46640
OsAffx.27342.1.S1_at--661--7531Chr05:26916981..26917005 (25 bp)
GTGGCACACTCAATCAATTTGCTGA
LOC_Os05g46640
OsAffx.27342.1.S1_at--407--8971Chr05:26917003..26917027 (25 bp)
TGAACACCAATCTACTGAACCCTAT
LOC_Os05g46640
OsAffx.27342.1.S1_at--839--32Chr05:26917103..26917127 (25 bp)
ATTGATATGGGTCCAAACCAGCCCC
LOC_Os05g46640
OsAffx.27342.1.S1_at--736--3792Chr05:26917131..26917155 (25 bp)
CTCCTACTAATCCTCAGAACCAAGG
LOC_Os05g46640
Target Sequence 
TAAATCTCACATCCTAGTTTGCAATGACCAAGATTTGGTTGAAATGTTTGCAAAACATAGGGCTATAAGAACATGTTTGT
TGACTGTTGCGTATCATAGCCCAAGTAGTGAGCCTTCTGTGATTCCCGATTGGGATTGTTCTAAGCAAAGCACTGTGAAC
CCTGCTCAACCCCCATTCACCCCTTCTATTGCATGTCCAAGCTTAGTTGAAGCAACAAGTGGCACACTCAATCAATTTGC
TGAACACCAATCTACTGAACCCTATTGTGATGAAACTGAATACCTTTGTAACCCAAATCCAATGTATGAGCATGTGGGTG
TTGATGATGAAGGTTTGTACATTGATATGGGTCCAAACCAGCCCCCTCCTCCTACTAATCCTCAGAACCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis