Browse Element(s) Details


OsAffx.15130.1.S1_at

Description tigr:9633.m04389
TID=OsAffx.15130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4668011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46620OsAffx.4640.1.S1_x_at11/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46620Os.7168.1.S1_at10/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46630Os.8550.1.S1_x_at11/115+26912470..26915901expressed protein
LOC_Os05g46640OsAffx.27342.1.S1_at11/115+26916366..26917351hypothetical protein
LOC_Os05g46650NANA5+26918379..26918819hypothetical protein
LOC_Os05g46660NANA5+26922489..26924411transposon protein, putative, Mutator sub-class
LOC_Os05g46670NANA5+26927289..26927726transposon protein, putative, unclassified
LOC_Os05g46680OsAffx.15130.1.S1_at11/115+26935282..26935895hypothetical protein
LOC_Os05g46690OsAffx.4641.1.S1_at11/115+26941703..26943787hypothetical protein
LOC_Os05g46700NANA5+26949660..26951087hypothetical protein
LOC_Os05g46710Os.56107.1.S1_at9/115+26953752..26955642expressed protein
LOC_Os05g46720Os.4058.1.S1_at10/115+26960087..26965297phosphatidylinositol transfer-like protein III, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15130.1.S1_at--464--9012Chr05:26935791..26935815 (25 bp)
TGCAACTTGCGGCTGGGTATCCTGT
LOC_Os05g46680
OsAffx.15130.1.S1_at--802--7852Chr05:26935776..26935800 (25 bp)
GGTATCCTGTTCAATGGTCTCATCA
LOC_Os05g46680
OsAffx.15130.1.S1_at--1083--1071Chr05:26935752..26935776 (25 bp)
AGGGCAAGGTGCCACACATTGTAGT
LOC_Os05g46680
OsAffx.15130.1.S1_at--570--5433Chr02:15915666..15915690 (25 bp)
GAACCAGTTGCAGACCTTGTGCTAA
NONE
OsAffx.15130.1.S1_at--307--9771Chr05:26935559..26935583 (25 bp)
TAATGGCAGATGACCCCTTTTTCTT
LOC_Os05g46680
OsAffx.15130.1.S1_at--303--10372Chr05:26935542..26935566 (25 bp)
TTTTTCTTCTTGTTGGCACCAGATG
LOC_Os05g46680
OsAffx.15130.1.S1_at--585--7912Chr05:26935492..26935516 (25 bp)
GGTTGCATTGGCCACTGCTTCATTG
LOC_Os05g46680
OsAffx.15130.1.S1_at--359--4911Chr05:26935476..26935500 (25 bp)
GCTTCATTGGCTGGAAAGACCATCT
LOC_Os05g46680
OsAffx.15130.1.S1_at--792--8012Chr05:26935450..26935474 (25 bp)
GGAGGGATTAGCCAACACTATACTG
LOC_Os05g46680
OsAffx.15130.1.S1_at--438--811Chr05:26935412..26935436 (25 bp)
ATGGTACAGCTTTCTTCAACCTCTT
LOC_Os05g46680
OsAffx.15130.1.S1_at--307--1791Chr05:26935353..26935377 (25 bp)
ACCGTACAGCGGCACTTGATAGGAG
LOC_Os05g46680
Target Sequence 
TGCAACTTGCGGCTGGGTATCCTGTTCAATGGTCTCATCAGGGCAAGGTGCCACACATTGTAGTGGAACTGGATCATTTG
AACCAGTTGCAGACCTTGTGCTAAAACAAAAGCATGATGCATTAGTAATGGCAGATGACCCCTTTTTCTTCTTGTTGGCA
CCAGATGAAGAAGAAGTCTTCCTTTTTTTGTGGGTTGCATTGGCCACTGCTTCATTGGCTGGAAAGACCATCTGGGAGGG
ATTAGCCAACACTATACTGGTATCAGTGTTACATGGTACAGCTTTCTTCAACCTCTTCTTTGGTAGACCTGTCACACCCC
AATCTGGCACCACCGTACAGCGGCACTTGATAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis