Browse Element(s) Details


Os.56107.1.S1_at

Description gb:AK109267.1
DB_XREF= gi:32994476
TID=Os.56107.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-A01, full insert sequence.
FL= gb:AK109267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g467109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46680OsAffx.15130.1.S1_at11/115+26935282..26935895hypothetical protein
LOC_Os05g46690OsAffx.4641.1.S1_at11/115+26941703..26943787hypothetical protein
LOC_Os05g46700NANA5+26949660..26951087hypothetical protein
LOC_Os05g46710Os.56107.1.S1_at9/115+26953752..26955642expressed protein
LOC_Os05g46720Os.4058.1.S1_at10/115+26960087..26965297phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os05g46730OsAffx.4643.1.S1_at11/115+26968340..26970191hypothetical protein
LOC_Os05g46740Os.24693.1.A1_s_at11/115+26974115..26980331regulator of chromosome condensation, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56107.1.S1_at--1114--1451Chr05:26954491..26954515 (25 bp)
AGAAGTGGATTCCTTCATCGCTGCA
LOC_Os05g46710
Os.56107.1.S1_at--853--3471Chr05:26954456..26954480 (25 bp)
CAGGTCCACCACAGCAGAATATCGA
LOC_Os05g46710
Os.56107.1.S1_at--502--5231Chr05:26954440..26954464 (25 bp)
GAATATCGACTGCACAGCAGCTGCA
LOC_Os05g46710
Os.56107.1.S1_at--406--3391Chr05:26954423..26954447 (25 bp)
CAGCTGCACGACGTCAGGCTAATAA
LOC_Os05g46710
Os.56107.1.S1_at--811--891Chr05:26954159..26954183 (25 bp)
AGGCCCTGAAAAGTTGCGCTATCCA
LOC_Os05g46710
Os.56107.1.S1_at--38--5491Chr05:26954110..26954134 (25 bp)
GAACTTTGTAGCATCTTCATCAGAT
LOC_Os05g46710
Os.56107.1.S1_at--661--8751Chr05:26953869..26953893 (25 bp)
TGTAGGGTGCCCAGATCTTCTGAAT
LOC_Os05g46710
Os.56107.1.S1_at--844--8711Chr05:26953839..26953863 (25 bp)
TGTCGACAACGATCACTGCTATGCT
LOC_Os05g46710
Os.56107.1.S1_at--768--7371Chr05:26953813..26953837 (25 bp)
GTGACGATAGGCTTAAGCACCCAAA
LOC_Os05g46710
Os.56107.1.S1_at--687--7871Chr05:26953748..26953772 (25 bp)
GGTTTCTATACGTCCTACTGAGTTT
NONE
Os.56107.1.S1_at--42--3671Chr05:26953705..26953729 (25 bp)
CTTAGTTATCTATCCTGTGCTATAT
NONE
Target Sequence 
AGAAGTGGATTCCTTCATCGCTGCAGCAGAAAAAACAGGTCCACCACAGCAGAATATCGACTGCACAGCAGCTGCACGAC
GTCAGGCTAATAACTATGCAAAAGTTGCTTTGGAGCACTACAACAAGGATGAAAACAACAAGATTCAATACAGGTTCATC
AAGGCCCTGAAAAGTTGCGCTATCCAAACCAACGAATCCTATGGGCATGTGAACTTTGTAGCATCTTCATCAGATTCAAA
AGAAGAGTTCTTTTTTGCTGAAGTTTGTTATGATCCCAAGAGCAATGGATTGGTACCAACATGCATGGTATCTTTGGAAG
AAAACAACAGAATTGGAGGACTTCTTGGTGTTGGATTTGTAGGGTGCCCAGATCTTCTGAATCCTCCTGTCGACAACGAT
CACTGCTATGCTTGTGACGATAGGCTTAAGCACCCAAAAGATGGAACTCTGTTTAAGGGTGGGCATGTAGCCGCCACGGG
TTTCTATACGTCCTACTGAGTTTGTAACAGACAAAAAAAAACTTAGTTATCTATCCTGTGCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis