Browse Element(s) Details


OsAffx.4643.1.S1_at

Description tigr:9633.m04394
TID=OsAffx.4643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4673011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46690OsAffx.4641.1.S1_at11/115+26941703..26943787hypothetical protein
LOC_Os05g46700NANA5+26949660..26951087hypothetical protein
LOC_Os05g46710Os.56107.1.S1_at9/115+26953752..26955642expressed protein
LOC_Os05g46720Os.4058.1.S1_at10/115+26960087..26965297phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os05g46730OsAffx.4643.1.S1_at11/115+26968340..26970191hypothetical protein
LOC_Os05g46740Os.24693.1.A1_s_at11/115+26974115..26980331regulator of chromosome condensation, putative, expressed
LOC_Os05g46750Os.56257.1.S1_at11/115+26984094..26986744Protein kinase domain containing protein, expressed
LOC_Os05g46760Os.6085.1.S1_at11/115+26992676..26994094Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4643.1.S1_at--75--5611Chr05:26968501..26968525 (25 bp)
GACAATGATGTGTACTTCAATTATT
LOC_Os05g46730
OsAffx.4643.1.S1_at--299--6271Chr05:26968495..26968519 (25 bp)
GATGTGTACTTCAATTATTTGGTAA
LOC_Os05g46730
OsAffx.4643.1.S1_at--422--191Chr05:26968479..26968503 (25 bp)
ATTTGGTAAACAAGTTCATCAATGT
LOC_Os05g46730
OsAffx.4643.1.S1_at--282--731Chr05:26968458..26968482 (25 bp)
ATGTTGCTACAAATGTAGTCCAACC
LOC_Os05g46730
OsAffx.4643.1.S1_at--782--6932Chr05:26968444..26968468 (25 bp)
GTAGTCCAACCAAATCAATCGGATG
LOC_Os05g46730
OsAffx.4643.1.S1_at--1157--7251Chr05:26968441..26968465 (25 bp)
GTCCAACCAAATCAATCGGATGATG
LOC_Os05g46730
OsAffx.4643.1.S1_at--311--8951Chr05:26968406..26968430 (25 bp)
TGACTTCGAGGAGGCTCTTCAGCGT
LOC_Os05g46730
OsAffx.4643.1.S1_at--432--10631Chr05:26968402..26968426 (25 bp)
TTCGAGGAGGCTCTTCAGCGTATTT
LOC_Os05g46730
OsAffx.4643.1.S1_at--53--991Chr05:26968398..26968422 (25 bp)
AGGAGGCTCTTCAGCGTATTTCTAA
LOC_Os05g46730
OsAffx.4643.1.S1_at--839--3371Chr05:26968387..26968411 (25 bp)
CAGCGTATTTCTAATGAATATGCAG
LOC_Os05g46730
OsAffx.4643.1.S1_at--486--5231Chr05:26968372..26968396 (25 bp)
GAATATGCAGAGAGCTCTCTGAAAA
LOC_Os05g46730
Target Sequence 
GACAATGATGTGTACTTCAATTATTTGGTAAACAAGTTCATCAATGTTGCTACAAATGTAGTCCAACCAAATCAATCGGA
TGATGATAGTGATGGTGACTTCGAGGAGGCTCTTCAGCGTATTTCTAATGAATATGCAGAGAGCTCTCTGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis