Browse Element(s) Details


Os.6085.1.S1_at

Description gb:AK105946.1
DB_XREF= gi:32991155
TID=Os.6085.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C05, full insert sequence.
FL= gb:AK105946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4676011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46730OsAffx.4643.1.S1_at11/115+26968340..26970191hypothetical protein
LOC_Os05g46740Os.24693.1.A1_s_at11/115+26974115..26980331regulator of chromosome condensation, putative, expressed
LOC_Os05g46750Os.56257.1.S1_at11/115+26984094..26986744Protein kinase domain containing protein, expressed
LOC_Os05g46760Os.6085.1.S1_at11/115+26992676..26994094Protein kinase domain containing protein, expressed
LOC_Os05g46770Os.49992.1.S1_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.49992.1.S1_s_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.53970.1.S1_at10/115+27001961..27005810expressed protein
LOC_Os05g46780Os.12959.1.S1_at11/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46780OsAffx.15132.1.S1_at7/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46790OsAffx.27346.1.S1_at11/115+27018323..27018883expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6085.1.S1_at--1043--4931Chr05:26993113..26993137 (25 bp)
GCATTGTGGGAGTCCGACACCGACG
LOC_Os05g46760
Os.6085.1.S1_at--448--4071Chr05:26993054..26993078 (25 bp)
CGAGAGGATCGGTTCACTGGCCTGC
LOC_Os05g46760
Os.6085.1.S1_at--51--5751Chr05:26992996..26993020 (25 bp)
GACGGCTGGATCGATGTGATCTCCA
LOC_Os05g46760
Os.6085.1.S1_at--206--9971Chr05:26992967..26992991 (25 bp)
TACCGAAGAATCCTGCGAGACCACC
LOC_Os05g46760
Os.6085.1.S1_at--1075--971Chr05:26992926..26992950 (25 bp)
AGGAGACGACGACTGACCTCAACGG
LOC_Os05g46760
Os.6085.1.S1_at--722--8371Chr05:26992903..26992927 (25 bp)
GGCGACATCAGAACCGCAGAATTCG
LOC_Os05g46760
Os.6085.1.S1_at--823--1471Chr05:26992886..26992910 (25 bp)
AGAATTCGAGCTTCCCCACATTGAC
LOC_Os05g46760
Os.6085.1.S1_at--920--10751Chr05:26992866..26992890 (25 bp)
TTGACGTGGACAGCGGCAATGGCAA
LOC_Os05g46760
Os.6085.1.S1_at--308--851Chr05:26992848..26992872 (25 bp)
ATGGCAACACCACCCACAATGTGGG
LOC_Os05g46760
Os.6085.1.S1_at--315--7651Chr05:26992826..26992850 (25 bp)
GGGAGAAGCCAATGCTCAGCACATT
LOC_Os05g46760
Os.6085.1.S1_at--555--1491Chr05:26992809..26992833 (25 bp)
AGCACATTATTTCCCCTTCGAATTT
LOC_Os05g46760
Target Sequence 
GCATTGTGGGAGTCCGACACCGACGAGGAGGAAGACGACGNGCTGTCGCAGAGCACGGCCGAGAGGATCGGTTCACTGGC
CTGCGCCGCCTCGTCGCTGCCGGATTGGGACTCCGACGACGGCTGGATCGATGTGATCTCCACCCCTACCGAAGAATCCT
GCGAGACCACCACCTCGCCGGCCGACGAGGAGACGACGACTGACCTCAACGGCGACATCAGAACCGCAGAATTCGAGCTT
CCCCACATTGACGTGGACAGCGGCAATGGCAACACCACCCACAATGTGGGAGAAGCCAATGCTCAGCACATTATTTCCCC
TTCGAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis