Browse Element(s) Details


Os.24693.1.A1_s_at

Description gb:CA762418
DB_XREF= gi:25806457
DB_XREF=BR060008B10F01.ab1
CLONE=BR060008B10F01.ab1
TID=Os.24693.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24693 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_199029.1 (A.thaliana) TMV resistance protein-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4674011/11regulator of chromosome condensation, putative, expressed
LOC_Os01g443941/11mRNA-associated protein mrnp 41, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46700NANA5+26949660..26951087hypothetical protein
LOC_Os05g46710Os.56107.1.S1_at9/115+26953752..26955642expressed protein
LOC_Os05g46720Os.4058.1.S1_at10/115+26960087..26965297phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os05g46730OsAffx.4643.1.S1_at11/115+26968340..26970191hypothetical protein
LOC_Os05g46740Os.24693.1.A1_s_at11/115+26974115..26980331regulator of chromosome condensation, putative, expressed
LOC_Os05g46750Os.56257.1.S1_at11/115+26984094..26986744Protein kinase domain containing protein, expressed
LOC_Os05g46760Os.6085.1.S1_at11/115+26992676..26994094Protein kinase domain containing protein, expressed
LOC_Os05g46770Os.49992.1.S1_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.49992.1.S1_s_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.53970.1.S1_at10/115+27001961..27005810expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
GO:0003682molecular_functionchromatin binding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24693.1.A1_s_at--86--5591Chr05:26974598..26974622 (25 bp)
GAAATACAACCATCCAACTAACTAG
LOC_Os05g46740
Os.24693.1.A1_s_at--315--1531Chr05:26974560..26974584 (25 bp)
AGCAGTGAAAGCAACAACCCATGTG
LOC_Os05g46740
Os.24693.1.A1_s_at--805--5911Chr05:26974512..26974536 (25 bp)
GAGCTACTGGGTAAGAATCTTGTTT
LOC_Os05g46740
Os.24693.1.A1_s_at--341--3071Chr05:26974497..26974521 (25 bp)
AATCTTGTTTTTCTCTTATGCTTAG
LOC_Os05g46740
Os.24693.1.A1_s_at--722--2832Chr01:25794255..25794274 (20 bp)
AAGTATAACTTCTGGCCTCTAGACC
LOC_Os01g44394
Os.24693.1.A1_s_at--618--8451Chr05:26974431..26974455 (25 bp)
TGGCCTCTAGACCAATTAGCAATGC
LOC_Os05g46740
Os.24693.1.A1_s_at--446--10451Chr05:26974416..26974440 (25 bp)
TTAGCAATGCACACAACCATATTTG
LOC_Os05g46740
Os.24693.1.A1_s_at--936--1151Chr05:26974370..26974394 (25 bp)
AGTCAGATACTAATGCCTCCACAAC
LOC_Os05g46740
Os.24693.1.A1_s_at--478--2651Chr05:26974348..26974372 (25 bp)
AACCACACGGATGGTGCCTACTGAA
LOC_Os05g46740
Os.24693.1.A1_s_at--258--7291Chr05:26974335..26974359 (25 bp)
GTGCCTACTGAATTGCTGATATACA
LOC_Os05g46740
Os.24693.1.A1_s_at--1005--6071Chr05:26974303..26974327 (25 bp)
GAGTATTGATGATTGTCCATTCTTT
LOC_Os05g46740
Target Sequence 
GAAATACAACCATCCAACTAACTAGGTTCCAAAGAAATAGCAGTGAAAGCAACAACCCATGTGAAATTACTTGTCATTTT
TAGAATGAGCTACTGGGTAAGAATCTTGTTTTTCTCTTATGCTTAGTAAATTTCTTTTCTTTTTTAAGATAATGGAAGTA
TAACTTCTGGCCTCTAGACCAATTAGCAATGCACACAACCATATTTGTGGATGAACTTTGGTGGGTAGAGTCAGATACTA
ATGCCTCCACAACCACACGGATGGTGCCTACTGAATTGCTGATATACATCTTGAAGAGTATTGATGATTGTCCATTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24693.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis